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| Mutant Information |
|---|
| Mutant Name | FN4493-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4493-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2031739 | C-T | HOMO | ||
| SBS | Chr1 | 14247972 | T-C | HET | ||
| SBS | Chr1 | 19382291 | T-G | HET | ||
| SBS | Chr1 | 39564258 | G-A | HET | ||
| SBS | Chr2 | 6639145 | G-A | HET | ||
| SBS | Chr2 | 17048463 | T-C | HET | ||
| SBS | Chr2 | 19077633 | A-G | HOMO | ||
| SBS | Chr2 | 20615986 | G-T | HET | ||
| SBS | Chr2 | 20854728 | G-A | HET | ||
| SBS | Chr2 | 20854729 | C-A | HET | ||
| SBS | Chr2 | 25729106 | C-A | HET | ||
| SBS | Chr2 | 29262804 | C-T | HET | ||
| SBS | Chr2 | 35269722 | A-G | HET | ||
| SBS | Chr3 | 3163822 | T-A | HOMO | ||
| SBS | Chr3 | 6035042 | A-C | HOMO | ||
| SBS | Chr3 | 8845754 | A-G | HET | ||
| SBS | Chr3 | 19869151 | C-G | HET | ||
| SBS | Chr3 | 19869152 | G-T | HET | ||
| SBS | Chr3 | 34980344 | G-T | HET | ||
| SBS | Chr4 | 60071 | T-C | HET | ||
| SBS | Chr4 | 14696420 | G-T | HET | ||
| SBS | Chr4 | 15237287 | C-T | HOMO | ||
| SBS | Chr4 | 16506925 | C-G | HET | ||
| SBS | Chr4 | 17454578 | C-G | HET | ||
| SBS | Chr5 | 12650987 | C-T | HET | ||
| SBS | Chr5 | 15284512 | C-G | HET | ||
| SBS | Chr6 | 9858905 | G-C | HET | ||
| SBS | Chr6 | 21776716 | G-A | HET | ||
| SBS | Chr7 | 11735045 | T-C | HET | ||
| SBS | Chr7 | 13687549 | C-T | HET | ||
| SBS | Chr7 | 13771412 | G-A | HET | ||
| SBS | Chr9 | 1529097 | A-G | HET | ||
| SBS | Chr9 | 6863847 | T-C | HET | ||
| SBS | Chr9 | 11813503 | T-C | HET | ||
| SBS | Chr9 | 14231254 | G-A | HET | ||
| SBS | Chr10 | 1325903 | A-C | HET | ||
| SBS | Chr10 | 7347080 | C-A | HET | ||
| SBS | Chr10 | 9806575 | T-A | HET | ||
| SBS | Chr10 | 9934450 | T-G | HET | ||
| SBS | Chr10 | 11273897 | G-C | HET | ||
| SBS | Chr10 | 13189433 | C-T | HET | ||
| SBS | Chr11 | 19124030 | C-A | HET | ||
| SBS | Chr11 | 22419950 | T-C | HET | ||
| SBS | Chr11 | 27884345 | A-G | HOMO | OsKitaake11g228300 | |
| SBS | Chr12 | 4254841 | A-T | HET | ||
| SBS | Chr12 | 18840159 | A-T | HET | ||
| SBS | Chr12 | 25282514 | G-A | HET | OsKitaake12g206100 |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 791709 | 791719 | 11 | |
| Deletion | Chr6 | 1247221 | 1247221 | 1 | |
| Deletion | Chr8 | 7169243 | 7169248 | 6 | |
| Deletion | Chr3 | 11686001 | 11895000 | 209000 | 28 |
| Deletion | Chr12 | 20294480 | 20294488 | 9 | OsKitaake12g157400 |
| Deletion | Chr9 | 20711243 | 20711255 | 13 | |
| Deletion | Chr1 | 20998001 | 21018000 | 20000 | OsKitaake01g205600 |
| Deletion | Chr9 | 21502767 | 21502773 | 7 | |
| Deletion | Chr10 | 22472231 | 22472231 | 1 | |
| Deletion | Chr12 | 24198784 | 24198796 | 13 | |
| Deletion | Chr11 | 28897088 | 28897089 | 2 | |
| Deletion | Chr3 | 30724145 | 30724146 | 2 |
Insertions: 5
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 5871662 | 5880627 | OsKitaake08g064100 |
| Inversion | Chr8 | 5871675 | 5880628 | OsKitaake08g064100 |
| Inversion | Chr8 | 10662072 | 10662283 | |
| Inversion | Chr3 | 11500660 | 11685438 | OsKitaake03g160800 |
| Inversion | Chr3 | 11500671 | 11895799 | OsKitaake03g160800 |
| Inversion | Chr7 | 12779309 | 12779360 | |
| Inversion | Chr5 | 21854980 | 21855410 | OsKitaake05g178500 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 11738024 | Chr1 | 43169016 | |
| Translocation | Chr7 | 12542922 | Chr6 | 12612584 | |
| Translocation | Chr7 | 12542923 | Chr6 | 12612785 | |
| Translocation | Chr6 | 12612568 | Chr3 | 11737760 | |
| Translocation | Chr6 | 12612785 | Chr1 | 42010070 |