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Mutant Information

Mutant Name	FN450-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN450-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4233108 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g056600
SBS Chr1 14837905 G-T Hetero INTERGENIC
SBS Chr1 18733256 T-C Homo INTERGENIC
SBS Chr1 26501368 T-G Homo INTERGENIC
SBS Chr1 27874625 A-G Homo INTERGENIC
SBS Chr3 2616881 A-C Hetero START_GAINED
SBS Chr3 3015804 T-A Hetero INTRON
SBS Chr3 3097175 A-T Hetero INTERGENIC
SBS Chr3 15859374 A-G Homo INTERGENIC
SBS Chr4 15590440 A-G Hetero INTERGENIC
SBS Chr4 19068652 C-G Hetero INTERGENIC
SBS Chr5 25223935 G-A Homo INTERGENIC
SBS Chr6 8362786 C-G Hetero INTERGENIC
SBS Chr6 26532255 C-T Hetero INTERGENIC
SBS Chr7 2827669 A-G Homo INTRON
SBS Chr8 18817485 C-T Homo INTERGENIC
SBS Chr8 22318371 C-T Homo INTERGENIC
SBS Chr8 23774581 G-A Hetero INTERGENIC
SBS Chr9 14169806 G-C Homo SYNONYMOUS_CODING
SBS Chr9 17532876 C-T Hetero INTERGENIC
SBS Chr10 10700868 C-T Homo INTERGENIC
SBS Chr10 20332560 T-C Hetero UTR_3_PRIME
SBS Chr11 4514908 A-C Homo INTERGENIC
SBS Chr11 8856070 G-A Homo INTERGENIC
SBS Chr12 6366805 G-C Hetero INTERGENIC
SBS Chr12 17776307 A-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 741567 741574 7
Deletion Chr9 5366429 5366440 11
Deletion Chr10 10107297 10107305 8
Deletion Chr2 10699600 10699606 6
Deletion Chr5 10944828 10944839 11
Deletion Chr7 12917827 12917912 85
Deletion Chr11 19396506 19396521 15
Deletion Chr3 30146366 30146369 3
Deletion Chr3 31622662 31622666 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 16228095 16228098 2
Insertion Chr8 2510172 2510174 1

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3618137 Chr4 8354969
Translocation Chr8 3709713 Chr4 8355310 OsKitaake08g041300
Translocation Chr5 10346002 Chr2 12702813 OsKitaake02g142100
Translocation Chr11 22254802 Chr6 24705142
Translocation Chr11 22254818 Chr6 24704866

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4233108	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g056600
SBS	Chr1	14837905	G-T	Hetero	INTERGENIC
SBS	Chr1	18733256	T-C	Homo	INTERGENIC
SBS	Chr1	26501368	T-G	Homo	INTERGENIC
SBS	Chr1	27874625	A-G	Homo	INTERGENIC
SBS	Chr3	2616881	A-C	Hetero	START_GAINED
SBS	Chr3	3015804	T-A	Hetero	INTRON
SBS	Chr3	3097175	A-T	Hetero	INTERGENIC
SBS	Chr3	15859374	A-G	Homo	INTERGENIC
SBS	Chr4	15590440	A-G	Hetero	INTERGENIC
SBS	Chr4	19068652	C-G	Hetero	INTERGENIC
SBS	Chr5	25223935	G-A	Homo	INTERGENIC
SBS	Chr6	8362786	C-G	Hetero	INTERGENIC
SBS	Chr6	26532255	C-T	Hetero	INTERGENIC
SBS	Chr7	2827669	A-G	Homo	INTRON
SBS	Chr8	18817485	C-T	Homo	INTERGENIC
SBS	Chr8	22318371	C-T	Homo	INTERGENIC
SBS	Chr8	23774581	G-A	Hetero	INTERGENIC
SBS	Chr9	14169806	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr9	17532876	C-T	Hetero	INTERGENIC
SBS	Chr10	10700868	C-T	Homo	INTERGENIC
SBS	Chr10	20332560	T-C	Hetero	UTR_3_PRIME
SBS	Chr11	4514908	A-C	Homo	INTERGENIC
SBS	Chr11	8856070	G-A	Homo	INTERGENIC
SBS	Chr12	6366805	G-C	Hetero	INTERGENIC
SBS	Chr12	17776307	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	741567	741574	7
Deletion	Chr9	5366429	5366440	11
Deletion	Chr10	10107297	10107305	8
Deletion	Chr2	10699600	10699606	6
Deletion	Chr5	10944828	10944839	11
Deletion	Chr7	12917827	12917912	85
Deletion	Chr11	19396506	19396521	15
Deletion	Chr3	30146366	30146369	3
Deletion	Chr3	31622662	31622666	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3618137	Chr4	8354969
Translocation	Chr8	3709713	Chr4	8355310	OsKitaake08g041300
Translocation	Chr5	10346002	Chr2	12702813	OsKitaake02g142100
Translocation	Chr11	22254802	Chr6	24705142
Translocation	Chr11	22254818	Chr6	24704866

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes