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Mutant Information 

Mutant NameFN4501-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4501-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr17154832G-AHET
SBS  Chr111347500G-AHET
SBS  Chr131744644G-AHET
SBS  Chr138743888G-AHET
SBS  Chr223785766A-THET
SBS  Chr236115592C-AHET
SBS  Chr236914833C-THET
SBS  Chr319164531C-THET
SBS  Chr320449942G-THET
SBS  Chr321313860T-AHOMO
SBS  Chr321313861T-AHOMO
SBS  Chr413948657A-THOMO
SBS  Chr417465260C-THET
SBS  Chr56932350A-CHET
SBS  Chr515888707A-THET
SBS  Chr516591023T-AHET
SBS  Chr516745189A-GHET
SBS  Chr69968444G-THET
SBS  Chr615853218C-THOMO
SBS  Chr618129826A-THOMO
SBS  Chr78138034A-THET
SBS  Chr712388476G-AHET
SBS  Chr718563595G-AHET
SBS  Chr724193338G-AHOMO
SBS  Chr89014170C-THET
SBS  Chr815742496T-AHET
SBS  Chr818018909G-CHOMO
SBS  Chr820306051G-AHET
SBS  Chr826056756G-AHET
SBS  Chr97114015A-THET
SBS  Chr99800113C-THET
SBS  Chr914381530C-THOMO
SBS  Chr102688655T-CHET
SBS  Chr103248946C-THOMO
SBS  Chr1016221735C-AHET
SBS  Chr1020687797G-THETOsKitaake10g159000
SBS  Chr1020687798A-THET
SBS  Chr1023846577A-GHET
SBS  Chr116159239T-CHET
SBS  Chr1120340088G-AHOMO
SBS  Chr126416433C-THET
SBS  Chr1213863392G-AHOMO

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr3114116811411681
Deletion  Chr7119609111960911
Deletion  Chr12261791926179279
Deletion  Chr58714953871496210
Deletion  Chr11110560271105603711
Deletion  Chr511056126110561261
Deletion  Chr711697584116975852
Deletion  Chr3122049401220495011
Deletion  Chr412923477129234804
Deletion  Chr12134526281345264922
Deletion  Chr1017918383179183831
Deletion  Chr518486759184867602
Deletion  Chr419954775199547795OsKitaake04g104300
Deletion  Chr3213953262139534015
Deletion  Chr11250314512503147424
Deletion  Chr425695821256958211
Deletion  Chr328633724286337263
Deletion  Chr134251710342517101
Deletion  Chr436120831361208311
Deletion  Chr1423040014232000016000

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr330355094303550972
Insertion  Chr1129539191295391931

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr262536666253852

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr823229057Chr327253437
Translocation  Chr823238679Chr327253435OsKitaake08g178700
Translocation  Chr824740208Chr140660353OsKitaake08g193100
Translocation  Chr824740505Chr140660342OsKitaake08g193100