Search Kitaake
Mutant Information |
---|
Mutant Name | FN4501-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4501-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
---|
Single base substitutions: 42
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 7154832 | G-A | HET | ||
SBS | Chr1 | 11347500 | G-A | HET | ||
SBS | Chr1 | 31744644 | G-A | HET | ||
SBS | Chr1 | 38743888 | G-A | HET | ||
SBS | Chr2 | 23785766 | A-T | HET | ||
SBS | Chr2 | 36115592 | C-A | HET | ||
SBS | Chr2 | 36914833 | C-T | HET | ||
SBS | Chr3 | 19164531 | C-T | HET | ||
SBS | Chr3 | 20449942 | G-T | HET | ||
SBS | Chr3 | 21313860 | T-A | HOMO | ||
SBS | Chr3 | 21313861 | T-A | HOMO | ||
SBS | Chr4 | 13948657 | A-T | HOMO | ||
SBS | Chr4 | 17465260 | C-T | HET | ||
SBS | Chr5 | 6932350 | A-C | HET | ||
SBS | Chr5 | 15888707 | A-T | HET | ||
SBS | Chr5 | 16591023 | T-A | HET | ||
SBS | Chr5 | 16745189 | A-G | HET | ||
SBS | Chr6 | 9968444 | G-T | HET | ||
SBS | Chr6 | 15853218 | C-T | HOMO | ||
SBS | Chr6 | 18129826 | A-T | HOMO | ||
SBS | Chr7 | 8138034 | A-T | HET | ||
SBS | Chr7 | 12388476 | G-A | HET | ||
SBS | Chr7 | 18563595 | G-A | HET | ||
SBS | Chr7 | 24193338 | G-A | HOMO | ||
SBS | Chr8 | 9014170 | C-T | HET | ||
SBS | Chr8 | 15742496 | T-A | HET | ||
SBS | Chr8 | 18018909 | G-C | HOMO | ||
SBS | Chr8 | 20306051 | G-A | HET | ||
SBS | Chr8 | 26056756 | G-A | HET | ||
SBS | Chr9 | 7114015 | A-T | HET | ||
SBS | Chr9 | 9800113 | C-T | HET | ||
SBS | Chr9 | 14381530 | C-T | HOMO | ||
SBS | Chr10 | 2688655 | T-C | HET | ||
SBS | Chr10 | 3248946 | C-T | HOMO | ||
SBS | Chr10 | 16221735 | C-A | HET | ||
SBS | Chr10 | 20687797 | G-T | HET | OsKitaake10g159000 | |
SBS | Chr10 | 20687798 | A-T | HET | ||
SBS | Chr10 | 23846577 | A-G | HET | ||
SBS | Chr11 | 6159239 | T-C | HET | ||
SBS | Chr11 | 20340088 | G-A | HOMO | ||
SBS | Chr12 | 6416433 | C-T | HET | ||
SBS | Chr12 | 13863392 | G-A | HOMO |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr3 | 1141168 | 1141168 | 1 | |
Deletion | Chr7 | 1196091 | 1196091 | 1 | |
Deletion | Chr12 | 2617919 | 2617927 | 9 | |
Deletion | Chr5 | 8714953 | 8714962 | 10 | |
Deletion | Chr11 | 11056027 | 11056037 | 11 | |
Deletion | Chr5 | 11056126 | 11056126 | 1 | |
Deletion | Chr7 | 11697584 | 11697585 | 2 | |
Deletion | Chr3 | 12204940 | 12204950 | 11 | |
Deletion | Chr4 | 12923477 | 12923480 | 4 | |
Deletion | Chr12 | 13452628 | 13452649 | 22 | |
Deletion | Chr10 | 17918383 | 17918383 | 1 | |
Deletion | Chr5 | 18486759 | 18486760 | 2 | |
Deletion | Chr4 | 19954775 | 19954779 | 5 | OsKitaake04g104300 |
Deletion | Chr3 | 21395326 | 21395340 | 15 | |
Deletion | Chr11 | 25031451 | 25031474 | 24 | |
Deletion | Chr4 | 25695821 | 25695821 | 1 | |
Deletion | Chr3 | 28633724 | 28633726 | 3 | |
Deletion | Chr1 | 34251710 | 34251710 | 1 | |
Deletion | Chr4 | 36120831 | 36120831 | 1 | |
Deletion | Chr1 | 42304001 | 42320000 | 16000 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr3 | 30355094 | 30355097 | 2 | |
Insertion | Chr11 | 29539191 | 29539193 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr2 | 6253666 | 6253852 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr8 | 23229057 | Chr3 | 27253437 | |
Translocation | Chr8 | 23238679 | Chr3 | 27253435 | OsKitaake08g178700 |
Translocation | Chr8 | 24740208 | Chr1 | 40660353 | OsKitaake08g193100 |
Translocation | Chr8 | 24740505 | Chr1 | 40660342 | OsKitaake08g193100 |