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Mutant Information |
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Mutant Name | FN4502-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4502-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 55
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 6926570 | A-T | HET | ||
SBS | Chr1 | 14813001 | G-A | HOMO | ||
SBS | Chr1 | 15611719 | C-T | HET | ||
SBS | Chr1 | 20911694 | G-T | HET | ||
SBS | Chr1 | 27322128 | A-T | HET | ||
SBS | Chr1 | 29213856 | C-A | HET | ||
SBS | Chr1 | 40337150 | A-G | HET | ||
SBS | Chr2 | 16161213 | C-A | HET | ||
SBS | Chr2 | 25589190 | C-A | HOMO | ||
SBS | Chr2 | 27022244 | T-G | HOMO | ||
SBS | Chr2 | 28907785 | T-C | HET | OsKitaake02g290600 | |
SBS | Chr2 | 31929457 | C-T | HET | ||
SBS | Chr2 | 33042219 | C-T | HET | ||
SBS | Chr3 | 16545324 | C-A | HET | ||
SBS | Chr3 | 16862470 | A-G | HET | ||
SBS | Chr3 | 19535358 | T-C | HET | ||
SBS | Chr3 | 32833044 | A-T | HET | ||
SBS | Chr3 | 34930440 | C-T | HET | ||
SBS | Chr4 | 7296281 | C-T | HET | ||
SBS | Chr4 | 9798493 | A-G | HET | ||
SBS | Chr4 | 14999794 | C-T | HET | ||
SBS | Chr4 | 14999795 | G-T | HET | ||
SBS | Chr4 | 15376316 | C-A | HET | ||
SBS | Chr4 | 17172413 | T-C | HET | ||
SBS | Chr4 | 18139445 | G-T | HET | ||
SBS | Chr4 | 19765833 | G-C | HET | ||
SBS | Chr4 | 22470273 | T-A | HET | ||
SBS | Chr4 | 24852057 | G-T | HOMO | ||
SBS | Chr5 | 5258889 | G-C | HET | ||
SBS | Chr5 | 10724619 | G-A | HET | ||
SBS | Chr5 | 22588775 | C-T | HOMO | ||
SBS | Chr5 | 22926200 | C-T | HOMO | ||
SBS | Chr5 | 26475211 | G-A | HOMO | ||
SBS | Chr5 | 28342075 | C-A | HOMO | ||
SBS | Chr6 | 10474604 | G-C | HET | ||
SBS | Chr6 | 18681155 | C-T | HET | ||
SBS | Chr6 | 21759263 | C-T | HET | ||
SBS | Chr6 | 27120320 | A-T | HOMO | ||
SBS | Chr7 | 7410966 | C-T | HET | ||
SBS | Chr7 | 27355627 | G-A | HET | ||
SBS | Chr8 | 2882552 | C-G | HOMO | ||
SBS | Chr8 | 17922775 | T-A | HET | ||
SBS | Chr9 | 5020697 | C-T | HOMO | ||
SBS | Chr9 | 5690989 | C-A | HOMO | ||
SBS | Chr9 | 8236107 | G-A | HET | ||
SBS | Chr10 | 2121355 | A-G | HET | ||
SBS | Chr10 | 5057124 | C-T | HET | ||
SBS | Chr10 | 17751214 | A-G | HET | ||
SBS | Chr10 | 19154190 | C-T | HET | ||
SBS | Chr10 | 23550287 | G-A | HET | ||
SBS | Chr11 | 4505071 | A-G | HET | ||
SBS | Chr11 | 20145601 | G-T | HET | ||
SBS | Chr11 | 24658447 | G-T | HET | ||
SBS | Chr12 | 1429725 | G-A | HET | ||
SBS | Chr12 | 12467304 | G-A | HET |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr1 | 280521 | 280521 | 1 | |
Deletion | Chr3 | 1850561 | 1850568 | 8 | |
Deletion | Chr3 | 5599914 | 5599914 | 1 | |
Deletion | Chr8 | 9237134 | 9237134 | 1 | |
Deletion | Chr3 | 11409038 | 11409040 | 3 | |
Deletion | Chr2 | 14747241 | 14747242 | 2 | |
Deletion | Chr3 | 17126929 | 17126929 | 1 | |
Deletion | Chr9 | 19222834 | 19222839 | 6 | |
Deletion | Chr3 | 22400329 | 22400332 | 4 | OsKitaake03g243700 |
Deletion | Chr8 | 22467590 | 22467591 | 2 | |
Deletion | Chr5 | 23807720 | 23807720 | 1 | |
Deletion | Chr6 | 25802971 | 25802971 | 1 | |
Deletion | Chr7 | 26532062 | 26532070 | 9 | |
Deletion | Chr6 | 28348674 | 28348682 | 9 | |
Deletion | Chr3 | 33555167 | 33555167 | 1 |
Insertions: 10
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr6 | 2061139 | 2061366 | |
Inversion | Chr10 | 13706442 | 13706595 | |
Inversion | Chr4 | 21827720 | 21827940 | OsKitaake04g125301 |
Inversion | Chr1 | 28041274 | 28041567 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr8 | 10904049 | Chr6 | 3986463 | |
Translocation | Chr8 | 10904055 | Chr6 | 3986818 |