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Mutant Information

Mutant Name	FN451-Sredo [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN451-Sredo Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11317016 T-C Homo INTERGENIC
SBS Chr1 22908670 T-A Homo SYNONYMOUS_CODING
SBS Chr1 36882078 G-A Homo INTRON
SBS Chr1 37707349 C-T Hetero INTERGENIC
SBS Chr1 37913859 C-T Homo INTERGENIC
SBS Chr1 40440009 G-T Homo INTERGENIC
SBS Chr2 10431072 G-T Hetero INTERGENIC
SBS Chr2 10431073 G-A Hetero INTERGENIC
SBS Chr3 8108938 C-A Homo INTRON
SBS Chr3 14418090 G-T Hetero INTRON
SBS Chr3 14418091 A-T Hetero INTRON
SBS Chr3 15943436 C-T Hetero INTRON
SBS Chr3 21299356 G-A Hetero INTERGENIC
SBS Chr4 2610377 T-G Hetero INTERGENIC
SBS Chr4 4086535 C-G Hetero INTERGENIC
SBS Chr4 13246131 T-A Hetero INTERGENIC
SBS Chr4 14074651 C-T Hetero INTERGENIC
SBS Chr4 27595655 C-T Homo INTERGENIC
SBS Chr4 36603038 G-T Homo INTERGENIC
SBS Chr5 1190517 A-G Hetero INTERGENIC
SBS Chr5 6329683 T-A Hetero INTERGENIC
SBS Chr5 21802529 A-G Homo INTRON
SBS Chr5 29842743 G-A Hetero INTERGENIC
SBS Chr6 9117465 A-T Hetero INTERGENIC
SBS Chr6 10803744 C-T Hetero INTERGENIC
SBS Chr6 13794643 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g144000
SBS Chr6 13794644 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g144000
SBS Chr6 20153985 C-A Hetero STOP_GAINED OsKitaake06g180500
SBS Chr7 8929297 C-T Hetero INTERGENIC
SBS Chr8 14015467 C-T Homo INTERGENIC
SBS Chr8 18868760 C-T Homo INTERGENIC
SBS Chr8 19044369 C-A Homo UTR_5_PRIME
SBS Chr8 20730736 C-T Hetero INTERGENIC
SBS Chr9 7437662 T-A Homo INTERGENIC
SBS Chr9 7437663 C-T Homo INTERGENIC
SBS Chr9 8135694 C-T Hetero INTERGENIC
SBS Chr10 23395891 T-A Hetero INTERGENIC
SBS Chr11 3677822 C-T Hetero INTERGENIC
SBS Chr11 6207554 G-A Homo INTERGENIC
SBS Chr11 6890900 T-C Homo INTERGENIC
SBS Chr11 28977742 G-A Homo INTRON
SBS Chr12 1437061 A-C Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1023271 1023284 13
Deletion Chr3 8034672 8034684 12
Deletion Chr1 11569861 11570023 162
Deletion Chr10 12680072 12680073 1
Deletion Chr7 15152880 15152883 3
Deletion Chr8 22160885 22160897 12
Deletion Chr9 22261478 22261480 2
Deletion Chr5 23935164 23935166 2
Deletion Chr11 29237367 29237371 4
Deletion Chr11 29412744 29412749 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1728742 1728746 3
Insertion Chr4 23355941 23355944 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 524223 1430032 OsKitaake12g021500
Inversion Chr12 524224 1430040 OsKitaake12g021500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11317016	T-C	Homo	INTERGENIC
SBS	Chr1	22908670	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	36882078	G-A	Homo	INTRON
SBS	Chr1	37707349	C-T	Hetero	INTERGENIC
SBS	Chr1	37913859	C-T	Homo	INTERGENIC
SBS	Chr1	40440009	G-T	Homo	INTERGENIC
SBS	Chr2	10431072	G-T	Hetero	INTERGENIC
SBS	Chr2	10431073	G-A	Hetero	INTERGENIC
SBS	Chr3	8108938	C-A	Homo	INTRON
SBS	Chr3	14418090	G-T	Hetero	INTRON
SBS	Chr3	14418091	A-T	Hetero	INTRON
SBS	Chr3	15943436	C-T	Hetero	INTRON
SBS	Chr3	21299356	G-A	Hetero	INTERGENIC
SBS	Chr4	2610377	T-G	Hetero	INTERGENIC
SBS	Chr4	4086535	C-G	Hetero	INTERGENIC
SBS	Chr4	13246131	T-A	Hetero	INTERGENIC
SBS	Chr4	14074651	C-T	Hetero	INTERGENIC
SBS	Chr4	27595655	C-T	Homo	INTERGENIC
SBS	Chr4	36603038	G-T	Homo	INTERGENIC
SBS	Chr5	1190517	A-G	Hetero	INTERGENIC
SBS	Chr5	6329683	T-A	Hetero	INTERGENIC
SBS	Chr5	21802529	A-G	Homo	INTRON
SBS	Chr5	29842743	G-A	Hetero	INTERGENIC
SBS	Chr6	9117465	A-T	Hetero	INTERGENIC
SBS	Chr6	10803744	C-T	Hetero	INTERGENIC
SBS	Chr6	13794643	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g144000
SBS	Chr6	13794644	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g144000
SBS	Chr6	20153985	C-A	Hetero	STOP_GAINED	OsKitaake06g180500
SBS	Chr7	8929297	C-T	Hetero	INTERGENIC
SBS	Chr8	14015467	C-T	Homo	INTERGENIC
SBS	Chr8	18868760	C-T	Homo	INTERGENIC
SBS	Chr8	19044369	C-A	Homo	UTR_5_PRIME
SBS	Chr8	20730736	C-T	Hetero	INTERGENIC
SBS	Chr9	7437662	T-A	Homo	INTERGENIC
SBS	Chr9	7437663	C-T	Homo	INTERGENIC
SBS	Chr9	8135694	C-T	Hetero	INTERGENIC
SBS	Chr10	23395891	T-A	Hetero	INTERGENIC
SBS	Chr11	3677822	C-T	Hetero	INTERGENIC
SBS	Chr11	6207554	G-A	Homo	INTERGENIC
SBS	Chr11	6890900	T-C	Homo	INTERGENIC
SBS	Chr11	28977742	G-A	Homo	INTRON
SBS	Chr12	1437061	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1023271	1023284	13
Deletion	Chr3	8034672	8034684	12
Deletion	Chr1	11569861	11570023	162
Deletion	Chr10	12680072	12680073	1
Deletion	Chr7	15152880	15152883	3
Deletion	Chr8	22160885	22160897	12
Deletion	Chr9	22261478	22261480	2
Deletion	Chr5	23935164	23935166	2
Deletion	Chr11	29237367	29237371	4
Deletion	Chr11	29412744	29412749	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	524223	1430032	OsKitaake12g021500
Inversion	Chr12	524224	1430040	OsKitaake12g021500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes