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Mutant Information

Mutant Name	FN4510-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4510-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2634021 G-T HET
SBS Chr1 2778811 C-A HET
SBS Chr1 8091238 G-A HOMO
SBS Chr1 11956861 G-A HET
SBS Chr1 25624096 C-T HOMO
SBS Chr1 35627953 C-T HET
SBS Chr2 9302579 G-A HET
SBS Chr2 9854055 C-T HET
SBS Chr2 10086434 C-G HOMO
SBS Chr2 12426579 C-T HET
SBS Chr2 15484288 T-A HET
SBS Chr2 25584805 T-C HET
SBS Chr3 32146293 C-T HET
SBS Chr4 2341296 G-A HET
SBS Chr4 3107028 T-A HET
SBS Chr4 9375661 G-T HET
SBS Chr4 9375663 G-A HET
SBS Chr4 11211337 G-A HET
SBS Chr4 14682288 C-T HET
SBS Chr4 23340802 G-C HOMO OsKitaake04g143300
SBS Chr4 24690462 A-T HET
SBS Chr6 541548 A-G HET
SBS Chr6 9016450 G-A HET
SBS Chr6 21217716 C-A HET
SBS Chr7 3275252 T-A HET
SBS Chr7 14487145 T-C HOMO
SBS Chr7 15868994 C-A HET
SBS Chr8 7394214 G-A HET
SBS Chr8 19415563 A-G HET
SBS Chr10 7382518 A-T HOMO
SBS Chr10 7382521 G-T HOMO
SBS Chr10 17359133 G-A HOMO
SBS Chr11 6318637 A-G HOMO
SBS Chr11 19561529 A-T HET
SBS Chr12 246139 T-C HET
SBS Chr12 12181325 T-A HOMO
SBS Chr12 23325547 G-C HET

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 210050 210057 8
Deletion Chr10 974337 974351 15
Deletion Chr4 1347001 1454000 107000 3
Deletion Chr1 1383664 1383664 1
Deletion Chr1 1456913 1456914 2
Deletion Chr9 2906942 2906947 6
Deletion Chr1 3059794 3059794 1
Deletion Chr8 3413067 3413068 2
Deletion Chr8 4699586 4699587 2
Deletion Chr5 4822701 4822717 17
Deletion Chr11 5227884 5227893 10 OsKitaake11g065800
Deletion Chr9 5392001 5601000 209000 11
Deletion Chr4 7589001 7634000 45000 3
Deletion Chr10 8657296 8657385 90
Deletion Chr5 9256709 9256710 2
Deletion Chr1 9579605 9579611 7
Deletion Chr11 12008425 12008426 2
Deletion Chr5 12488978 12488978 1
Deletion Chr8 15445267 15445268 2
Deletion Chr8 20557002 20557002 1
Deletion Chr8 22708371 22708372 2
Deletion Chr8 22787438 22787469 32
Deletion Chr1 24022130 24022147 18 OsKitaake01g230900
Deletion Chr6 26781878 26781897 20
Deletion Chr2 33849055 33849055 1
Deletion Chr4 36560609 36560612 4
Deletion Chr4 36668922 36668935 14
Deletion Chr1 37189778 37189784 7
Deletion Chr1 38834001 38867000 33000 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43987690 43987693 2
Insertion Chr7 11992111 11992113 1
Insertion Chr7 17516310 17516312 1
Insertion Chr3 27769926 27769929 2
Insertion Chr6 6828259 6828261 1
Insertion Chr12 521607 521610 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 16950777 16998307
Inversion Chr8 16950829 16998309

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 13160588 Chr4 15908449
Translocation Chr6 17010357 Chr5 15742162
Translocation Chr6 17010638 Chr5 15742171

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2634021	G-T	HET
SBS	Chr1	2778811	C-A	HET
SBS	Chr1	8091238	G-A	HOMO
SBS	Chr1	11956861	G-A	HET
SBS	Chr1	25624096	C-T	HOMO
SBS	Chr1	35627953	C-T	HET
SBS	Chr2	9302579	G-A	HET
SBS	Chr2	9854055	C-T	HET
SBS	Chr2	10086434	C-G	HOMO
SBS	Chr2	12426579	C-T	HET
SBS	Chr2	15484288	T-A	HET
SBS	Chr2	25584805	T-C	HET
SBS	Chr3	32146293	C-T	HET
SBS	Chr4	2341296	G-A	HET
SBS	Chr4	3107028	T-A	HET
SBS	Chr4	9375661	G-T	HET
SBS	Chr4	9375663	G-A	HET
SBS	Chr4	11211337	G-A	HET
SBS	Chr4	14682288	C-T	HET
SBS	Chr4	23340802	G-C	HOMO		OsKitaake04g143300
SBS	Chr4	24690462	A-T	HET
SBS	Chr6	541548	A-G	HET
SBS	Chr6	9016450	G-A	HET
SBS	Chr6	21217716	C-A	HET
SBS	Chr7	3275252	T-A	HET
SBS	Chr7	14487145	T-C	HOMO
SBS	Chr7	15868994	C-A	HET
SBS	Chr8	7394214	G-A	HET
SBS	Chr8	19415563	A-G	HET
SBS	Chr10	7382518	A-T	HOMO
SBS	Chr10	7382521	G-T	HOMO
SBS	Chr10	17359133	G-A	HOMO
SBS	Chr11	6318637	A-G	HOMO
SBS	Chr11	19561529	A-T	HET
SBS	Chr12	246139	T-C	HET
SBS	Chr12	12181325	T-A	HOMO
SBS	Chr12	23325547	G-C	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	210050	210057	8
Deletion	Chr10	974337	974351	15
Deletion	Chr4	1347001	1454000	107000	3
Deletion	Chr1	1383664	1383664	1
Deletion	Chr1	1456913	1456914	2
Deletion	Chr9	2906942	2906947	6
Deletion	Chr1	3059794	3059794	1
Deletion	Chr8	3413067	3413068	2
Deletion	Chr8	4699586	4699587	2
Deletion	Chr5	4822701	4822717	17
Deletion	Chr11	5227884	5227893	10	OsKitaake11g065800
Deletion	Chr9	5392001	5601000	209000	11
Deletion	Chr4	7589001	7634000	45000	3
Deletion	Chr10	8657296	8657385	90
Deletion	Chr5	9256709	9256710	2
Deletion	Chr1	9579605	9579611	7
Deletion	Chr11	12008425	12008426	2
Deletion	Chr5	12488978	12488978	1
Deletion	Chr8	15445267	15445268	2
Deletion	Chr8	20557002	20557002	1
Deletion	Chr8	22708371	22708372	2
Deletion	Chr8	22787438	22787469	32
Deletion	Chr1	24022130	24022147	18	OsKitaake01g230900
Deletion	Chr6	26781878	26781897	20
Deletion	Chr2	33849055	33849055	1
Deletion	Chr4	36560609	36560612	4
Deletion	Chr4	36668922	36668935	14
Deletion	Chr1	37189778	37189784	7
Deletion	Chr1	38834001	38867000	33000	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16950777	16998307
Inversion	Chr8	16950829	16998309

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes