Search Kitaake
Mutant Information |
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Mutant Name | FN4514-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4514-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 19205870 | A-C | HET | ||
SBS | Chr1 | 27852941 | C-T | HOMO | ||
SBS | Chr1 | 36818665 | C-T | HET | ||
SBS | Chr2 | 9086978 | G-T | HET | ||
SBS | Chr2 | 17668772 | G-A | HET | ||
SBS | Chr2 | 36278495 | T-C | HET | ||
SBS | Chr3 | 9537381 | T-A | HET | ||
SBS | Chr3 | 10186532 | T-G | HOMO | ||
SBS | Chr3 | 10186538 | A-T | HOMO | ||
SBS | Chr3 | 17965735 | C-A | HOMO | ||
SBS | Chr3 | 20775430 | T-A | HOMO | ||
SBS | Chr3 | 21621060 | G-A | HET | ||
SBS | Chr3 | 29668141 | C-T | HOMO | ||
SBS | Chr4 | 6145521 | G-A | HOMO | ||
SBS | Chr4 | 18333513 | G-A | HET | ||
SBS | Chr5 | 13443302 | C-T | HOMO | ||
SBS | Chr5 | 17757149 | A-G | HOMO | ||
SBS | Chr5 | 17915120 | A-G | HET | ||
SBS | Chr5 | 27756876 | C-A | HET | OsKitaake05g254100 | |
SBS | Chr6 | 10012833 | C-T | HET | ||
SBS | Chr6 | 24411373 | G-T | HOMO | ||
SBS | Chr6 | 24411374 | A-T | HOMO | ||
SBS | Chr7 | 2301973 | A-T | HET | ||
SBS | Chr7 | 19967171 | A-T | HET | ||
SBS | Chr7 | 27379212 | G-T | HET | OsKitaake07g254600 | |
SBS | Chr8 | 2679299 | T-C | HET | ||
SBS | Chr8 | 15245337 | C-T | HET | ||
SBS | Chr8 | 25251958 | C-G | HET | ||
SBS | Chr9 | 7464323 | T-C | HET | ||
SBS | Chr10 | 18136165 | C-G | HET | ||
SBS | Chr11 | 4818323 | C-G | HET | ||
SBS | Chr11 | 27782802 | T-C | HET | ||
SBS | Chr11 | 28493150 | T-C | HET | ||
SBS | Chr12 | 15014075 | A-C | HET | ||
SBS | Chr12 | 15477179 | C-T | HET |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr8 | 5339835 | 5339835 | 1 | OsKitaake08g058100 |
Deletion | Chr3 | 5453013 | 5453016 | 4 | OsKitaake03g077200 |
Deletion | Chr6 | 15582055 | 15582061 | 7 | |
Deletion | Chr6 | 17845795 | 17845798 | 4 | |
Deletion | Chr3 | 23002586 | 23002586 | 1 | |
Deletion | Chr1 | 23310843 | 23310844 | 2 | |
Deletion | Chr6 | 23830383 | 23830387 | 5 | |
Deletion | Chr6 | 26997658 | 26997658 | 1 | |
Deletion | Chr6 | 28542170 | 28542179 | 10 | |
Deletion | Chr2 | 28699224 | 28699225 | 2 | |
Deletion | Chr4 | 36722001 | 36811000 | 89000 | 13 |
Insertions: 6
Inversions: 8
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr11 | 2001588 | 2398577 | OsKitaake11g028800 |
Inversion | Chr11 | 2001617 | 2398592 | OsKitaake11g028800 |
Inversion | Chr12 | 3081810 | 3236982 | |
Inversion | Chr12 | 3081814 | 3236998 | |
Inversion | Chr9 | 8154353 | 8154560 | |
Inversion | Chr4 | 12296153 | 12296439 | OsKitaake04g059700 |
Inversion | Chr10 | 14709078 | 14888706 | |
Inversion | Chr10 | 14709086 | 14888708 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr2 | 15400812 | Chr1 | 22605534 | |
Translocation | Chr2 | 15528336 | Chr1 | 22605534 |