Search Kitaake

Mutant Information

Mutant Name	FN4518-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4518-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26027887 C-T HOMO
SBS Chr1 28401474 T-C HET OsKitaake01g275000
SBS Chr1 35263756 G-A HET OsKitaake01g371500
SBS Chr2 8701279 A-G HET
SBS Chr2 15814086 C-T HET
SBS Chr2 24726473 T-C HOMO
SBS Chr2 29626569 C-G HOMO
SBS Chr3 10182700 T-G HOMO
SBS Chr3 24789985 A-C HET
SBS Chr4 32928320 G-A HOMO
SBS Chr5 6107066 T-C HOMO
SBS Chr5 8275685 T-C HET
SBS Chr5 12305921 G-C HOMO
SBS Chr5 24161666 C-A HET
SBS Chr5 25585625 C-T HET
SBS Chr6 7987971 G-A HET
SBS Chr6 9651978 C-T HET
SBS Chr6 11646029 G-C HOMO
SBS Chr6 22280287 C-T HET
SBS Chr7 6489648 A-C HOMO
SBS Chr7 6491606 A-G HOMO
SBS Chr7 24341082 G-A HET
SBS Chr7 25992475 C-T HET
SBS Chr8 5125399 C-T HET
SBS Chr8 5131125 T-C HET
SBS Chr8 10471229 T-C HET
SBS Chr8 12250879 T-C HET
SBS Chr9 6810337 T-A HET OsKitaake09g039000
SBS Chr9 7117701 G-T HET
SBS Chr9 12506540 C-T HET
SBS Chr9 20529488 T-C HET
SBS Chr10 16943769 C-T HET
SBS Chr11 3266309 T-C HET
SBS Chr11 7621785 T-C HET
SBS Chr11 12360367 C-A HET
SBS Chr12 23328006 G-A HET
SBS Chr12 26466675 G-A HET

Deletions: 32

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1714718 1714719 2
Deletion Chr12 1933048 1933054 7
Deletion Chr1 2010822 2010822 1
Deletion Chr1 3889890 3889930 41
Deletion Chr9 4067108 4067109 2
Deletion Chr1 4837533 4837534 2
Deletion Chr12 5707001 5751000 44000 6
Deletion Chr2 9087742 9087744 3
Deletion Chr5 10187339 10187362 24
Deletion Chr10 11175001 11395000 220000 15
Deletion Chr8 11396803 11396804 2
Deletion Chr10 11577001 11602000 25000 2
Deletion Chr9 12799763 12799763 1
Deletion Chr4 12931978 12931979 2
Deletion Chr7 13148870 13148875 6
Deletion Chr7 16748001 16776000 28000
Deletion Chr10 16996220 16996220 1
Deletion Chr11 17622506 17622508 3
Deletion Chr1 18319526 18319527 2
Deletion Chr11 18474038 18474046 9
Deletion Chr11 19187181 19187181 1
Deletion Chr11 19403039 19403044 6
Deletion Chr4 19661164 19661164 1
Deletion Chr9 20354235 20354238 4
Deletion Chr12 21919001 22020000 101000 12
Deletion Chr1 22167199 22167199 1
Deletion Chr3 24158001 24175000 17000 OsKitaake03g258100
Deletion Chr5 27202801 27202801 1
Deletion Chr3 28038327 28038352 26
Deletion Chr6 28648001 28669000 21000 3
Deletion Chr4 31248096 31248100 5
Deletion Chr2 33302215 33302219 5

Insertions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23311156 23311159 2
Insertion Chr3 422579 422582 2
Insertion Chr5 1673491 1673493 1
Insertion Chr8 13999299 13999302 2
Insertion Chr9 10099975 10099980 4
Insertion Chr10 8267973 8267982 8
Insertion Chr10 17374154 17374156 1
Insertion Chr11 15580870 15580874 3
Insertion Chr1 2929928 2929930 1
Insertion Chr3 2631012 2631014 1
Insertion Chr4 13417197 13417199 1
Insertion Chr4 23147570 23147573 2
Insertion Chr7 10102943 10102945 1 OsKitaake07g099500
Insertion Chr8 17352396 17352399 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 24580656 25178642
Inversion Chr2 24580666 25178642 OsKitaake02g244300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 21918624 Chr4 18070301
Translocation Chr12 21918917 Chr4 18070292

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26027887	C-T	HOMO
SBS	Chr1	28401474	T-C	HET		OsKitaake01g275000
SBS	Chr1	35263756	G-A	HET		OsKitaake01g371500
SBS	Chr2	8701279	A-G	HET
SBS	Chr2	15814086	C-T	HET
SBS	Chr2	24726473	T-C	HOMO
SBS	Chr2	29626569	C-G	HOMO
SBS	Chr3	10182700	T-G	HOMO
SBS	Chr3	24789985	A-C	HET
SBS	Chr4	32928320	G-A	HOMO
SBS	Chr5	6107066	T-C	HOMO
SBS	Chr5	8275685	T-C	HET
SBS	Chr5	12305921	G-C	HOMO
SBS	Chr5	24161666	C-A	HET
SBS	Chr5	25585625	C-T	HET
SBS	Chr6	7987971	G-A	HET
SBS	Chr6	9651978	C-T	HET
SBS	Chr6	11646029	G-C	HOMO
SBS	Chr6	22280287	C-T	HET
SBS	Chr7	6489648	A-C	HOMO
SBS	Chr7	6491606	A-G	HOMO
SBS	Chr7	24341082	G-A	HET
SBS	Chr7	25992475	C-T	HET
SBS	Chr8	5125399	C-T	HET
SBS	Chr8	5131125	T-C	HET
SBS	Chr8	10471229	T-C	HET
SBS	Chr8	12250879	T-C	HET
SBS	Chr9	6810337	T-A	HET		OsKitaake09g039000
SBS	Chr9	7117701	G-T	HET
SBS	Chr9	12506540	C-T	HET
SBS	Chr9	20529488	T-C	HET
SBS	Chr10	16943769	C-T	HET
SBS	Chr11	3266309	T-C	HET
SBS	Chr11	7621785	T-C	HET
SBS	Chr11	12360367	C-A	HET
SBS	Chr12	23328006	G-A	HET
SBS	Chr12	26466675	G-A	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1714718	1714719	2
Deletion	Chr12	1933048	1933054	7
Deletion	Chr1	2010822	2010822	1
Deletion	Chr1	3889890	3889930	41
Deletion	Chr9	4067108	4067109	2
Deletion	Chr1	4837533	4837534	2
Deletion	Chr12	5707001	5751000	44000	6
Deletion	Chr2	9087742	9087744	3
Deletion	Chr5	10187339	10187362	24
Deletion	Chr10	11175001	11395000	220000	15
Deletion	Chr8	11396803	11396804	2
Deletion	Chr10	11577001	11602000	25000	2
Deletion	Chr9	12799763	12799763	1
Deletion	Chr4	12931978	12931979	2
Deletion	Chr7	13148870	13148875	6
Deletion	Chr7	16748001	16776000	28000
Deletion	Chr10	16996220	16996220	1
Deletion	Chr11	17622506	17622508	3
Deletion	Chr1	18319526	18319527	2
Deletion	Chr11	18474038	18474046	9
Deletion	Chr11	19187181	19187181	1
Deletion	Chr11	19403039	19403044	6
Deletion	Chr4	19661164	19661164	1
Deletion	Chr9	20354235	20354238	4
Deletion	Chr12	21919001	22020000	101000	12
Deletion	Chr1	22167199	22167199	1
Deletion	Chr3	24158001	24175000	17000	OsKitaake03g258100
Deletion	Chr5	27202801	27202801	1
Deletion	Chr3	28038327	28038352	26
Deletion	Chr6	28648001	28669000	21000	3
Deletion	Chr4	31248096	31248100	5
Deletion	Chr2	33302215	33302219	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	24580656	25178642
Inversion	Chr2	24580666	25178642	OsKitaake02g244300

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes