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| Mutant Information |
|---|
| Mutant Name | FN452-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN452-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23250226 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 31221615 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4988204 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 17147362 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 31230975 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 8380151 | A-C | Homo | INTRON | |
| SBS | Chr3 | 25275447 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25275448 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 2452172 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 4685764 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5721313 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 10207713 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 20247187 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 3170013 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 5305330 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1690769 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g021700 |
| SBS | Chr8 | 2248749 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4309670 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 16750641 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 2859552 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 11589904 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g072700 |
| SBS | Chr10 | 18261418 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6510110 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16595429 | G-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 918018 | 918029 | 11 | |
| Deletion | Chr10 | 2399001 | 2476000 | 76999 | 3 |
| Deletion | Chr7 | 11984659 | 11984660 | 1 | |
| Deletion | Chr11 | 18461596 | 18461598 | 2 | |
| Deletion | Chr3 | 20035146 | 20035300 | 154 | |
| Deletion | Chr12 | 21208307 | 21208315 | 8 | |
| Deletion | Chr7 | 24502389 | 24502400 | 11 | OsKitaake07g218100 |
| Deletion | Chr5 | 26043814 | 26043815 | 1 | |
| Deletion | Chr4 | 26165899 | 26165901 | 2 | |
| Deletion | Chr4 | 30002658 | 30002669 | 11 | OsKitaake04g230300 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 34919097 | 34919100 | 2 | |
| Insertion | Chr5 | 20346644 | 20346647 | 2 | |
| Insertion | Chr8 | 22823116 | 22823118 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 3656984 | 3658008 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 3656991 | Chr10 | 2476219 |