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Mutant Information

Mutant Name	FN4526-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4526-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4342819 T-C HOMO
SBS Chr1 7361098 G-A HOMO
SBS Chr1 14522402 C-A HET
SBS Chr1 20899338 C-A HET
SBS Chr1 33692865 T-A HET
SBS Chr2 15356384 T-A HET
SBS Chr3 9231464 A-G HOMO
SBS Chr4 3869323 C-T HET
SBS Chr4 13779559 T-G HET
SBS Chr5 12814724 G-A HOMO
SBS Chr5 17603595 A-T HET
SBS Chr5 19070340 A-T HET
SBS Chr5 19854147 T-A HET
SBS Chr6 26653818 C-T HET
SBS Chr7 8361189 G-A HET
SBS Chr7 8476191 A-G HOMO
SBS Chr7 18218778 G-T HET
SBS Chr7 19890259 C-G HET
SBS Chr7 26007881 C-A HET OsKitaake07g238400
SBS Chr9 3907507 C-T HET
SBS Chr12 12501699 G-A HET

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 893468 893470 3
Deletion Chr8 2703570 2703586 17
Deletion Chr7 2726304 2726304 1
Deletion Chr2 4439565 4439570 6
Deletion Chr5 4896949 4896949 1
Deletion Chr3 6287470 6287473 4
Deletion Chr5 6811341 6811341 1
Deletion Chr7 8276730 8276730 1
Deletion Chr3 9016242 9016259 18
Deletion Chr8 9167385 9167385 1 OsKitaake08g083400
Deletion Chr4 10451260 10451268 9
Deletion Chr6 11571602 11571603 2
Deletion Chr12 14146001 14180000 34000 3
Deletion Chr6 15735098 15735098 1
Deletion Chr3 16194485 16194486 2
Deletion Chr12 18193001 18245000 52000 4
Deletion Chr8 19523319 19523333 15
Deletion Chr7 20044001 20105000 61000 8
Deletion Chr5 20220093 20220094 2
Deletion Chr10 21685343 21685343 1 OsKitaake10g173600
Deletion Chr7 21873813 21873813 1
Deletion Chr11 26044856 26044856 1
Deletion Chr5 28148249 28148249 1
Deletion Chr2 36392151 36392154 4
Deletion Chr3 37379469 37379469 1

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16898154 16898156 1
Insertion Chr1 39801893 39801895 1
Insertion Chr3 6051714 6051716 1
Insertion Chr3 31603000 31603003 2
Insertion Chr4 16222214 16222216 1
Insertion Chr7 5690792 5690794 1
Insertion Chr7 25365057 25365059 1
Insertion Chr11 12139873 12139875 1
Insertion Chr4 8197222 8197224 1
Insertion Chr9 21709444 21709448 3
Insertion Chr10 20038548 20038550 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 3792968 3793153
Inversion Chr2 3933100 3933223
Inversion Chr9 8867980 8868189
Inversion Chr12 13363229 14014954 OsKitaake12g111100
Inversion Chr12 13365132 14014958 OsKitaake12g111100
Inversion Chr2 27933601 27933848

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 13363241 Chr9 20533776 2
Translocation Chr12 13363374 Chr9 20533789 2
Translocation Chr2 13817418 Chr1 17253002
Translocation Chr12 18193650 Chr1 9994699

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4342819	T-C	HOMO
SBS	Chr1	7361098	G-A	HOMO
SBS	Chr1	14522402	C-A	HET
SBS	Chr1	20899338	C-A	HET
SBS	Chr1	33692865	T-A	HET
SBS	Chr2	15356384	T-A	HET
SBS	Chr3	9231464	A-G	HOMO
SBS	Chr4	3869323	C-T	HET
SBS	Chr4	13779559	T-G	HET
SBS	Chr5	12814724	G-A	HOMO
SBS	Chr5	17603595	A-T	HET
SBS	Chr5	19070340	A-T	HET
SBS	Chr5	19854147	T-A	HET
SBS	Chr6	26653818	C-T	HET
SBS	Chr7	8361189	G-A	HET
SBS	Chr7	8476191	A-G	HOMO
SBS	Chr7	18218778	G-T	HET
SBS	Chr7	19890259	C-G	HET
SBS	Chr7	26007881	C-A	HET		OsKitaake07g238400
SBS	Chr9	3907507	C-T	HET
SBS	Chr12	12501699	G-A	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	893468	893470	3
Deletion	Chr8	2703570	2703586	17
Deletion	Chr7	2726304	2726304	1
Deletion	Chr2	4439565	4439570	6
Deletion	Chr5	4896949	4896949	1
Deletion	Chr3	6287470	6287473	4
Deletion	Chr5	6811341	6811341	1
Deletion	Chr7	8276730	8276730	1
Deletion	Chr3	9016242	9016259	18
Deletion	Chr8	9167385	9167385	1	OsKitaake08g083400
Deletion	Chr4	10451260	10451268	9
Deletion	Chr6	11571602	11571603	2
Deletion	Chr12	14146001	14180000	34000	3
Deletion	Chr6	15735098	15735098	1
Deletion	Chr3	16194485	16194486	2
Deletion	Chr12	18193001	18245000	52000	4
Deletion	Chr8	19523319	19523333	15
Deletion	Chr7	20044001	20105000	61000	8
Deletion	Chr5	20220093	20220094	2
Deletion	Chr10	21685343	21685343	1	OsKitaake10g173600
Deletion	Chr7	21873813	21873813	1
Deletion	Chr11	26044856	26044856	1
Deletion	Chr5	28148249	28148249	1
Deletion	Chr2	36392151	36392154	4
Deletion	Chr3	37379469	37379469	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3792968	3793153
Inversion	Chr2	3933100	3933223
Inversion	Chr9	8867980	8868189
Inversion	Chr12	13363229	14014954	OsKitaake12g111100
Inversion	Chr12	13365132	14014958	OsKitaake12g111100
Inversion	Chr2	27933601	27933848

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes