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| Mutant Information |
|---|
| Mutant Name | FN453-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN453-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13335362 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 33143858 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 33143859 | C-A | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 36892257 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 44210249 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 11041248 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20305816 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33548398 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 33548399 | C-A | Hetero | INTRON | |
| SBS | Chr2 | 33548400 | A-C | Hetero | INTRON | |
| SBS | Chr3 | 9681475 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g131800 |
| SBS | Chr3 | 11462769 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 12303000 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17465528 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18445095 | C-T | Homo | INTRON | |
| SBS | Chr3 | 22557553 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26477150 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 26477151 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 32061581 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 14303445 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 36681508 | A-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 13293046 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 20192702 | A-G | Homo | INTRON | |
| SBS | Chr7 | 24636681 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 5941922 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 18579885 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 622012 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10193408 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 14154625 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 24103412 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 24103418 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 24118776 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 13720004 | A-G | Homo | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 6754 | 7106 | 352 | |
| Deletion | Chr12 | 526001 | 755000 | 228999 | 49 |
| Deletion | Chr6 | 19907427 | 19907434 | 7 | |
| Deletion | Chr6 | 19928944 | 19928945 | 1 | |
| Deletion | Chr9 | 21720092 | 21720095 | 3 | |
| Deletion | Chr3 | 35084905 | 35084910 | 5 | OsKitaake03g383900 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 15301167 | 15301170 | 2 | |
| Insertion | Chr5 | 25465948 | 25465951 | 2 | |
| Insertion | Chr3 | 16744382 | 16744384 | 1 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 19254190 | Chr8 | 17997522 | OsKitaake08g133900 |
| Translocation | Chr9 | 19254191 | Chr8 | 17997192 | |
| Translocation | Chr10 | 22615149 | Chr8 | 18593562 | |
| Translocation | Chr10 | 22615159 | Chr8 | 18593300 |