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| Mutant Information |
|---|
| Mutant Name | FN4530-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4530-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4551030 | G-T | HET | ||
| SBS | Chr1 | 15895615 | A-G | HET | ||
| SBS | Chr2 | 3114631 | T-C | HET | ||
| SBS | Chr2 | 11328593 | G-A | HOMO | ||
| SBS | Chr4 | 192217 | A-T | HET | ||
| SBS | Chr4 | 5064939 | G-A | HET | ||
| SBS | Chr4 | 8734659 | G-A | HET | ||
| SBS | Chr4 | 9448354 | T-C | HET | ||
| SBS | Chr4 | 27946427 | G-A | HET | ||
| SBS | Chr5 | 6729827 | C-G | HET | ||
| SBS | Chr5 | 11320324 | G-T | HET | ||
| SBS | Chr5 | 23811321 | G-T | HET | ||
| SBS | Chr5 | 23811325 | A-G | HET | ||
| SBS | Chr5 | 27758524 | G-A | HET | ||
| SBS | Chr6 | 7885422 | G-A | HET | ||
| SBS | Chr6 | 12314376 | C-T | HET | ||
| SBS | Chr6 | 12314379 | A-G | HET | ||
| SBS | Chr7 | 10536977 | A-T | HET | ||
| SBS | Chr7 | 16422201 | A-G | HOMO | ||
| SBS | Chr8 | 6558051 | G-C | HET | ||
| SBS | Chr9 | 3106008 | T-A | HET | ||
| SBS | Chr9 | 12238480 | G-T | HET | OsKitaake09g080000 | |
| SBS | Chr9 | 17632092 | T-C | HOMO | ||
| SBS | Chr10 | 22955801 | G-T | HET | ||
| SBS | Chr11 | 7200260 | A-G | HET | ||
| SBS | Chr11 | 11415020 | T-C | HET | ||
| SBS | Chr11 | 17608700 | G-A | HET | ||
| SBS | Chr12 | 7555217 | T-A | HOMO | ||
| SBS | Chr12 | 26041725 | A-T | HET |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 102679 | 102679 | 1 | |
| Deletion | Chr9 | 3215948 | 3215948 | 1 | |
| Deletion | Chr5 | 4290435 | 4290453 | 19 | |
| Deletion | Chr1 | 9684891 | 9684896 | 6 | |
| Deletion | Chr6 | 9901869 | 9901873 | 5 | |
| Deletion | Chr3 | 12788289 | 12788294 | 6 | |
| Deletion | Chr5 | 12813637 | 12813637 | 1 | |
| Deletion | Chr1 | 13930589 | 13930589 | 1 | |
| Deletion | Chr2 | 14354406 | 14354425 | 20 | |
| Deletion | Chr3 | 20105368 | 20105368 | 1 | |
| Deletion | Chr3 | 20563993 | 20563994 | 2 | |
| Deletion | Chr9 | 21527149 | 21527164 | 16 | OsKitaake09g188450 |
| Deletion | Chr6 | 21919001 | 21951000 | 32000 | 6 |
| Deletion | Chr3 | 22550566 | 22550566 | 1 | |
| Deletion | Chr3 | 25852441 | 25852444 | 4 | |
| Deletion | Chr4 | 26400639 | 26400643 | 5 | |
| Deletion | Chr7 | 29566345 | 29566352 | 8 | |
| Deletion | Chr1 | 38467660 | 38467660 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 8953015 | 8953017 | 1 | |
| Insertion | Chr4 | 16609136 | 16609140 | 3 | |
| Insertion | Chr6 | 11003159 | 11003161 | 1 | |
| Insertion | Chr12 | 25110941 | 25110944 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 216288 | 268183 | |
| Inversion | Chr3 | 268192 | 532040 | |
| Inversion | Chr8 | 5313461 | 5332461 | |
| Inversion | Chr8 | 5313472 | 5332460 |