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| Mutant Information |
|---|
| Mutant Name | FN4536-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4536-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11368301 | T-A | HOMO | ||
| SBS | Chr1 | 11368302 | T-G | HOMO | ||
| SBS | Chr1 | 19555810 | C-T | HOMO | ||
| SBS | Chr2 | 4388546 | C-T | HOMO | ||
| SBS | Chr2 | 17931389 | G-A | HET | ||
| SBS | Chr3 | 1770997 | T-C | HOMO | ||
| SBS | Chr3 | 1771007 | T-C | HOMO | ||
| SBS | Chr3 | 16424095 | G-A | HET | ||
| SBS | Chr3 | 17895616 | G-A | HET | ||
| SBS | Chr4 | 4681348 | C-G | HET | ||
| SBS | Chr4 | 6028338 | G-C | HOMO | ||
| SBS | Chr4 | 22706646 | T-C | HET | ||
| SBS | Chr4 | 24491191 | G-A | HOMO | ||
| SBS | Chr4 | 29161821 | C-T | HOMO | ||
| SBS | Chr5 | 5337769 | C-T | HET | ||
| SBS | Chr5 | 6877058 | T-C | HET | ||
| SBS | Chr5 | 21678220 | C-A | HET | ||
| SBS | Chr5 | 21904233 | A-T | HOMO | ||
| SBS | Chr6 | 17393304 | C-T | HET | ||
| SBS | Chr8 | 21858361 | G-A | HET | ||
| SBS | Chr9 | 10752635 | G-T | HET | ||
| SBS | Chr9 | 18094336 | T-A | HET | ||
| SBS | Chr10 | 2369397 | T-C | HOMO | ||
| SBS | Chr10 | 10313112 | G-A | HOMO | ||
| SBS | Chr10 | 19331158 | T-C | HET | ||
| SBS | Chr11 | 16580555 | C-A | HOMO | ||
| SBS | Chr11 | 16778867 | G-T | HOMO | ||
| SBS | Chr11 | 17743189 | T-C | HOMO | ||
| SBS | Chr11 | 25435837 | C-A | HET | ||
| SBS | Chr12 | 13296719 | G-C | HOMO | OsKitaake12g110600 | |
| SBS | Chr12 | 15094445 | C-T | HET | ||
| SBS | Chr12 | 17998376 | T-C | HET | OsKitaake12g132300 | |
| SBS | Chr12 | 25089233 | G-A | HET | ||
| SBS | Chr12 | 25089236 | G-A | HET | ||
| SBS | Chr12 | 25408502 | T-G | HET |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 569785 | 569788 | 4 | OsKitaake04g004200 |
| Deletion | Chr3 | 3470744 | 3470758 | 15 | |
| Deletion | Chr3 | 4951195 | 4951198 | 4 | |
| Deletion | Chr12 | 11806108 | 11806114 | 7 | |
| Deletion | Chr12 | 11807680 | 11807680 | 1 | |
| Deletion | Chr11 | 12496111 | 12496111 | 1 | |
| Deletion | Chr5 | 14523877 | 14523877 | 1 | |
| Deletion | Chr9 | 15910072 | 15910072 | 1 | |
| Deletion | Chr11 | 17081001 | 17133000 | 52000 | 5 |
| Deletion | Chr3 | 20669615 | 20669624 | 10 |
Insertions: 11
Inversions: 7
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 17080810 | Chr2 | 16441391 |