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Mutant Information

Mutant Name	FN454-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN454-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 33711780 G-A Hetero INTERGENIC
SBS Chr1 37201699 C-T Hetero INTERGENIC
SBS Chr1 39821058 G-T Hetero INTERGENIC
SBS Chr2 11341113 C-T Homo INTERGENIC
SBS Chr2 31052314 C-T Hetero INTERGENIC
SBS Chr3 29107582 T-C Homo INTERGENIC
SBS Chr4 31574714 G-A Hetero INTERGENIC
SBS Chr4 35096440 A-T Homo UTR_3_PRIME
SBS Chr5 10248475 T-A Hetero INTERGENIC
SBS Chr5 24444847 G-A Hetero INTERGENIC
SBS Chr5 24444848 G-A Hetero INTERGENIC
SBS Chr5 27924495 C-T Hetero INTERGENIC
SBS Chr6 10066230 G-C Homo INTERGENIC
SBS Chr6 24849063 G-A Hetero INTERGENIC
SBS Chr6 28351810 C-T Homo INTERGENIC
SBS Chr6 28351811 A-C Homo INTERGENIC
SBS Chr7 964195 A-G Hetero INTERGENIC
SBS Chr8 5582124 G-T Hetero INTERGENIC
SBS Chr8 9339386 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g085500
SBS Chr8 12255825 C-T Hetero INTERGENIC
SBS Chr8 13612378 A-T Hetero INTERGENIC
SBS Chr8 17450072 A-C Hetero INTERGENIC
SBS Chr8 18004139 T-A Hetero INTERGENIC
SBS Chr8 18004140 C-T Hetero INTERGENIC
SBS Chr9 15312605 G-A Hetero INTERGENIC
SBS Chr10 240764 G-T Hetero INTERGENIC
SBS Chr10 6002093 A-T Hetero INTERGENIC
SBS Chr10 6002098 T-G Hetero INTERGENIC
SBS Chr11 11395306 C-T Hetero INTERGENIC
SBS Chr12 20318936 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 18326 18327 1
Deletion Chr6 9839228 9839229 1
Deletion Chr6 10174842 10174847 5 OsKitaake06g116400
Deletion Chr11 16323030 16323034 4
Deletion Chr7 16905032 16905034 2
Deletion Chr1 17242104 17242106 2
Deletion Chr4 18662482 18662484 2
Deletion Chr10 23868375 23868376 1
Deletion Chr11 25423372 25423373 1
Deletion Chr7 26595294 26595295 1
Deletion Chr12 26599558 26599567 9
Deletion Chr3 26898319 26898321 2
Deletion Chr4 35251382 35251388 6
Deletion Chr3 36268487 36268496 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10343054 10343057 2
Insertion Chr1 27630046 27630049 2
Insertion Chr5 23978164 23978169 4
Insertion Chr9 12736075 12736078 2
Insertion Chr10 5135594 5135597 2
Insertion Chr10 23256523 23256526 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 16928300 16992510 OsKitaake08g129200

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9750119 Chr6 2642284
Translocation Chr12 26011415 Chr1 37261373 OsKitaake12g215300
Translocation Chr12 26011418 Chr1 37260785 OsKitaake12g215300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33711780	G-A	Hetero	INTERGENIC
SBS	Chr1	37201699	C-T	Hetero	INTERGENIC
SBS	Chr1	39821058	G-T	Hetero	INTERGENIC
SBS	Chr2	11341113	C-T	Homo	INTERGENIC
SBS	Chr2	31052314	C-T	Hetero	INTERGENIC
SBS	Chr3	29107582	T-C	Homo	INTERGENIC
SBS	Chr4	31574714	G-A	Hetero	INTERGENIC
SBS	Chr4	35096440	A-T	Homo	UTR_3_PRIME
SBS	Chr5	10248475	T-A	Hetero	INTERGENIC
SBS	Chr5	24444847	G-A	Hetero	INTERGENIC
SBS	Chr5	24444848	G-A	Hetero	INTERGENIC
SBS	Chr5	27924495	C-T	Hetero	INTERGENIC
SBS	Chr6	10066230	G-C	Homo	INTERGENIC
SBS	Chr6	24849063	G-A	Hetero	INTERGENIC
SBS	Chr6	28351810	C-T	Homo	INTERGENIC
SBS	Chr6	28351811	A-C	Homo	INTERGENIC
SBS	Chr7	964195	A-G	Hetero	INTERGENIC
SBS	Chr8	5582124	G-T	Hetero	INTERGENIC
SBS	Chr8	9339386	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g085500
SBS	Chr8	12255825	C-T	Hetero	INTERGENIC
SBS	Chr8	13612378	A-T	Hetero	INTERGENIC
SBS	Chr8	17450072	A-C	Hetero	INTERGENIC
SBS	Chr8	18004139	T-A	Hetero	INTERGENIC
SBS	Chr8	18004140	C-T	Hetero	INTERGENIC
SBS	Chr9	15312605	G-A	Hetero	INTERGENIC
SBS	Chr10	240764	G-T	Hetero	INTERGENIC
SBS	Chr10	6002093	A-T	Hetero	INTERGENIC
SBS	Chr10	6002098	T-G	Hetero	INTERGENIC
SBS	Chr11	11395306	C-T	Hetero	INTERGENIC
SBS	Chr12	20318936	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	18326	18327	1
Deletion	Chr6	9839228	9839229	1
Deletion	Chr6	10174842	10174847	5	OsKitaake06g116400
Deletion	Chr11	16323030	16323034	4
Deletion	Chr7	16905032	16905034	2
Deletion	Chr1	17242104	17242106	2
Deletion	Chr4	18662482	18662484	2
Deletion	Chr10	23868375	23868376	1
Deletion	Chr11	25423372	25423373	1
Deletion	Chr7	26595294	26595295	1
Deletion	Chr12	26599558	26599567	9
Deletion	Chr3	26898319	26898321	2
Deletion	Chr4	35251382	35251388	6
Deletion	Chr3	36268487	36268496	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16928300	16992510	OsKitaake08g129200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes