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| Mutant Information |
|---|
| Mutant Name | FN4547-2-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4547-2-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19636790 | A-G | HOMO | ||
| SBS | Chr1 | 23104235 | G-A | HET | ||
| SBS | Chr2 | 13482735 | C-T | HET | ||
| SBS | Chr2 | 13958205 | C-T | HET | ||
| SBS | Chr5 | 2918940 | G-A | HET | ||
| SBS | Chr5 | 12262466 | C-G | HET | ||
| SBS | Chr5 | 19046708 | G-A | HET | OsKitaake05g149000 | |
| SBS | Chr6 | 16725513 | A-G | HET | ||
| SBS | Chr6 | 21349122 | C-T | HOMO | ||
| SBS | Chr6 | 22244626 | G-A | HOMO | ||
| SBS | Chr6 | 28969949 | A-G | HET | ||
| SBS | Chr7 | 6155703 | A-G | HOMO | ||
| SBS | Chr7 | 8669136 | T-A | HET | ||
| SBS | Chr7 | 8669138 | T-C | HET | ||
| SBS | Chr7 | 26136566 | C-T | HET | ||
| SBS | Chr7 | 29486915 | G-A | HET | ||
| SBS | Chr9 | 4983441 | T-C | HET | ||
| SBS | Chr9 | 11753574 | T-A | HET | ||
| SBS | Chr9 | 15891770 | T-A | HET | ||
| SBS | Chr9 | 15891791 | T-C | HET | ||
| SBS | Chr10 | 10258576 | G-A | HOMO | ||
| SBS | Chr10 | 12384899 | G-A | HET | ||
| SBS | Chr10 | 23194621 | A-G | HET | OsKitaake10g195600 | |
| SBS | Chr11 | 7383115 | C-T | HET | ||
| SBS | Chr11 | 21262313 | C-T | HET | ||
| SBS | Chr11 | 28341308 | C-T | HET | ||
| SBS | Chr12 | 12460436 | G-A | HOMO | ||
| SBS | Chr12 | 22111314 | C-T | HOMO |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 296138 | 296143 | 6 | |
| Deletion | Chr5 | 2226695 | 2226702 | 8 | OsKitaake05g024900 |
| Deletion | Chr5 | 2520850 | 2520852 | 3 | |
| Deletion | Chr6 | 2683376 | 2683376 | 1 | |
| Deletion | Chr12 | 4758018 | 4758018 | 1 | OsKitaake12g062000 |
| Deletion | Chr10 | 9627091 | 9627097 | 7 | |
| Deletion | Chr3 | 17538124 | 17538124 | 1 | |
| Deletion | Chr12 | 18996958 | 18996961 | 4 | |
| Deletion | Chr12 | 19166687 | 19166692 | 6 | |
| Deletion | Chr7 | 19292168 | 19292169 | 2 | |
| Deletion | Chr12 | 19640163 | 19640169 | 7 | |
| Deletion | Chr3 | 20040046 | 20040355 | 310 | |
| Deletion | Chr9 | 21200244 | 21200247 | 4 | |
| Deletion | Chr12 | 22435490 | 22435492 | 3 | |
| Deletion | Chr1 | 22803104 | 22803122 | 19 | |
| Deletion | Chr5 | 26367212 | 26367212 | 1 | |
| Deletion | Chr6 | 26527963 | 26527981 | 19 | OsKitaake06g238100 |
| Deletion | Chr2 | 29387374 | 29387379 | 6 |
Insertions: 7
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 713091 | 713270 | |
| Inversion | Chr11 | 1643894 | 1644100 | |
| Inversion | Chr1 | 8227933 | 8714562 | OsKitaake01g109300 |
| Inversion | Chr1 | 8227936 | 8714561 | OsKitaake01g109300 |
| Inversion | Chr10 | 23861780 | 23861851 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 12381918 | Chr2 | 33832977 |