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| Mutant Information |
|---|
| Mutant Name | FN4549-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4549-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10838411 | A-T | HET | ||
| SBS | Chr1 | 27703324 | C-T | HET | ||
| SBS | Chr2 | 7529607 | C-G | HOMO | ||
| SBS | Chr2 | 34401022 | C-T | HOMO | ||
| SBS | Chr3 | 34824313 | C-T | HOMO | OsKitaake03g379800 | |
| SBS | Chr3 | 34824315 | C-T | HOMO | OsKitaake03g379800 | |
| SBS | Chr4 | 3505842 | C-T | HOMO | ||
| SBS | Chr4 | 27608714 | T-C | HOMO | ||
| SBS | Chr4 | 33255347 | G-T | HET | ||
| SBS | Chr6 | 2531152 | C-T | HOMO | ||
| SBS | Chr6 | 7109392 | G-A | HOMO | ||
| SBS | Chr6 | 16255128 | C-G | HET | ||
| SBS | Chr6 | 25477530 | G-A | HET | ||
| SBS | Chr6 | 29321740 | C-T | HET | ||
| SBS | Chr7 | 23856662 | A-T | HET | ||
| SBS | Chr7 | 23856663 | C-T | HET | ||
| SBS | Chr8 | 453298 | A-G | HET | ||
| SBS | Chr8 | 19505431 | C-T | HET | ||
| SBS | Chr8 | 20582107 | C-T | HET | ||
| SBS | Chr9 | 9963934 | T-C | HET | ||
| SBS | Chr10 | 3256200 | G-A | HET | ||
| SBS | Chr10 | 9270125 | A-G | HET | ||
| SBS | Chr10 | 11675606 | C-T | HET | ||
| SBS | Chr10 | 23636549 | C-T | HET | ||
| SBS | Chr11 | 13984342 | A-T | HET | ||
| SBS | Chr11 | 13984343 | A-T | HET | ||
| SBS | Chr12 | 11057727 | T-G | HOMO | ||
| SBS | Chr12 | 13923193 | G-A | HET | ||
| SBS | Chr12 | 27049119 | A-G | HET |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 5726078 | 5726078 | 1 | |
| Deletion | Chr1 | 9103548 | 9103549 | 2 | 2 |
| Deletion | Chr2 | 11628368 | 11628377 | 10 | |
| Deletion | Chr7 | 12130087 | 12130087 | 1 | |
| Deletion | Chr8 | 12457796 | 12457796 | 1 | |
| Deletion | Chr6 | 14239989 | 14239990 | 2 | |
| Deletion | Chr11 | 17957005 | 17957005 | 1 | |
| Deletion | Chr12 | 19600589 | 19600590 | 2 | |
| Deletion | Chr2 | 19647857 | 19647859 | 3 | |
| Deletion | Chr2 | 20715505 | 20715509 | 5 | |
| Deletion | Chr12 | 21967001 | 22030000 | 63000 | 9 |
| Deletion | Chr4 | 23988707 | 23988711 | 5 | OsKitaake04g151800 |
| Deletion | Chr6 | 26180618 | 26180620 | 3 | |
| Deletion | Chr7 | 26395298 | 26395298 | 1 | 2 |
| Deletion | Chr6 | 28477319 | 28477319 | 1 | |
| Deletion | Chr3 | 30315781 | 30315781 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 22455092 | 22455094 | 1 | |
| Insertion | Chr12 | 16122257 | 16122260 | 2 | |
| Insertion | Chr5 | 4930470 | 4930472 | 1 | |
| Insertion | Chr5 | 11951208 | 11951210 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 2630224 | 2630351 | |
| Inversion | Chr3 | 34824461 | 35110063 | OsKitaake03g379800 |
| Inversion | Chr3 | 34824465 | 35110064 | OsKitaake03g379800 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 27075557 | Chr3 | 16551767 | |
| Translocation | Chr11 | 27077775 | Chr3 | 16551758 | OsKitaake11g220900 |