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| Mutant Information |
|---|
| Mutant Name | FN455-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN455-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 24742809 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29868084 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 9340681 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g116000 |
| SBS | Chr4 | 24659101 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 35074721 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29818229 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 11838814 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 26477947 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 11626141 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19790420 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5198894 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 17077309 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18550120 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5089393 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15133931 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 16085954 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18051101 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18051102 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18051104 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18878061 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 18878066 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 27411832 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1233387 | C-T | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 135001 | 175000 | 39999 | 6 |
| Deletion | Chr12 | 3073461 | 3073463 | 2 | |
| Deletion | Chr7 | 8464411 | 8464484 | 73 | |
| Deletion | Chr5 | 10394001 | 10471000 | 76999 | |
| Deletion | Chr7 | 14030617 | 14030818 | 201 | OsKitaake07g121100 |
| Deletion | Chr7 | 16674620 | 16674621 | 1 | |
| Deletion | Chr3 | 18900135 | 18900140 | 5 | |
| Deletion | Chr7 | 20575326 | 20575328 | 2 | |
| Deletion | Chr12 | 21996292 | 21996293 | 1 | OsKitaake12g172800 |
| Deletion | Chr2 | 26019962 | 26019963 | 1 | |
| Deletion | Chr3 | 27177271 | 27177275 | 4 | OsKitaake03g280066 |
| Deletion | Chr3 | 27561938 | 27561941 | 3 | OsKitaake03g285000 |
| Deletion | Chr3 | 37161871 | 37161874 | 3 | OsKitaake03g415500 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 25385548 | 25385551 | 2 | |
| Insertion | Chr4 | 15771735 | 15771737 | 1 |
Inversions: 9
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 3063427 | 3324017 | OsKitaake07g042100 |
| Inversion | Chr7 | 3063432 | 3324028 | OsKitaake07g042100 |
| Inversion | Chr3 | 15675744 | 16093871 | OsKitaake03g201200 |
| Inversion | Chr3 | 15675783 | 16093875 | OsKitaake03g201200 |
| Inversion | Chr12 | 17407602 | 17422807 | OsKitaake12g128000 |
| Inversion | Chr8 | 18912124 | 19538036 | |
| Inversion | Chr8 | 18912134 | 19538044 | |
| Inversion | Chr5 | 21822159 | 22147605 | OsKitaake05g178300 |
| Inversion | Chr5 | 21822172 | 22147631 | OsKitaake05g178300 |
Translocations: 8
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 10398579 | Chr2 | 31431583 | |
| Translocation | Chr12 | 17403617 | Chr5 | 1906089 | |
| Translocation | Chr12 | 17403628 | Chr1 | 13820187 | |
| Translocation | Chr12 | 17407598 | Chr1 | 13820175 | |
| Translocation | Chr12 | 17422796 | Chr9 | 11315016 | OsKitaake12g128000 |
| Translocation | Chr12 | 20346528 | Chr9 | 11315017 | |
| Translocation | Chr5 | 29869831 | Chr2 | 973232 | 2 |
| Translocation | Chr5 | 29869837 | Chr2 | 973237 | 2 |