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| Mutant Information |
|---|
| Mutant Name | FN4554-2-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4554-2-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18106302 | A-C | HOMO | ||
| SBS | Chr1 | 40908172 | G-A | HET | ||
| SBS | Chr2 | 18981259 | C-T | HET | ||
| SBS | Chr2 | 29393472 | A-G | HET | ||
| SBS | Chr2 | 30197320 | C-T | HOMO | ||
| SBS | Chr2 | 34828723 | T-C | HET | ||
| SBS | Chr3 | 23765328 | C-T | HET | ||
| SBS | Chr4 | 11599756 | G-A | HET | ||
| SBS | Chr4 | 13469600 | C-T | HET | ||
| SBS | Chr4 | 15139549 | C-T | HET | ||
| SBS | Chr4 | 18656724 | G-A | HET | ||
| SBS | Chr4 | 22018302 | C-A | HET | ||
| SBS | Chr4 | 24971117 | A-G | HET | ||
| SBS | Chr4 | 26963666 | T-A | HET | OsKitaake04g195800 | |
| SBS | Chr5 | 19705520 | G-A | HET | ||
| SBS | Chr5 | 22036227 | G-A | HET | ||
| SBS | Chr5 | 25725786 | C-T | HET | ||
| SBS | Chr5 | 29932588 | A-T | HET | ||
| SBS | Chr6 | 16685269 | T-G | HET | ||
| SBS | Chr6 | 24419585 | A-G | HOMO | ||
| SBS | Chr7 | 1467409 | G-A | HET | ||
| SBS | Chr7 | 12235608 | T-A | HET | ||
| SBS | Chr8 | 6554460 | G-T | HOMO | ||
| SBS | Chr8 | 10585757 | A-G | HET | ||
| SBS | Chr9 | 10822422 | C-T | HET | ||
| SBS | Chr9 | 21390643 | C-T | HOMO | OsKitaake09g185400 | |
| SBS | Chr9 | 21708343 | G-A | HOMO | ||
| SBS | Chr10 | 6148535 | A-T | HET | ||
| SBS | Chr10 | 12017272 | C-G | HET | ||
| SBS | Chr10 | 14821467 | C-T | HET | ||
| SBS | Chr11 | 3888149 | C-T | HET | ||
| SBS | Chr12 | 7525408 | C-A | HET |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 395779 | 395779 | 1 | |
| Deletion | Chr8 | 3207793 | 3207799 | 7 | |
| Deletion | Chr1 | 4351337 | 4351337 | 1 | |
| Deletion | Chr2 | 7815254 | 7815254 | 1 | |
| Deletion | Chr10 | 8715698 | 8715698 | 1 | |
| Deletion | Chr7 | 8764158 | 8764159 | 2 | |
| Deletion | Chr2 | 17340766 | 17340766 | 1 | OsKitaake02g174100 |
| Deletion | Chr7 | 17746963 | 17746963 | 1 | |
| Deletion | Chr8 | 17863955 | 17863957 | 3 | |
| Deletion | Chr3 | 18292065 | 18292065 | 1 | |
| Deletion | Chr7 | 22340582 | 22340585 | 4 | OsKitaake07g189100 |
| Deletion | Chr5 | 25385612 | 25385612 | 1 | |
| Deletion | Chr7 | 28096203 | 28096205 | 3 | |
| Deletion | Chr3 | 29362955 | 29362956 | 2 |
Insertions: 8
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 15196075 | 15196168 | |
| Inversion | Chr8 | 19873322 | 19873547 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 6424771 | Chr2 | 35914969 | |
| Translocation | Chr11 | 6424859 | Chr2 | 35914967 | |
| Translocation | Chr7 | 9736121 | Chr4 | 27680766 | |
| Translocation | Chr7 | 9748814 | Chr4 | 27680551 |