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| Mutant Information |
|---|
| Mutant Name | FN4556-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4556-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 50
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16879256 | C-T | HET | ||
| SBS | Chr1 | 20978851 | A-T | HET | ||
| SBS | Chr1 | 26740586 | C-T | HET | OsKitaake01g259800 | |
| SBS | Chr2 | 33187035 | T-A | HOMO | ||
| SBS | Chr2 | 35476990 | C-T | HET | ||
| SBS | Chr3 | 1093084 | T-A | HET | ||
| SBS | Chr3 | 2584014 | T-G | HET | ||
| SBS | Chr3 | 10873982 | G-A | HET | ||
| SBS | Chr3 | 12522011 | T-A | HOMO | ||
| SBS | Chr3 | 25064851 | G-C | HET | ||
| SBS | Chr3 | 34456923 | C-A | HET | ||
| SBS | Chr4 | 6476454 | A-G | HET | ||
| SBS | Chr4 | 12966448 | C-T | HOMO | ||
| SBS | Chr4 | 33325980 | T-C | HOMO | ||
| SBS | Chr5 | 6769043 | G-A | HET | ||
| SBS | Chr5 | 19370701 | G-T | HET | ||
| SBS | Chr5 | 19370702 | G-T | HET | ||
| SBS | Chr6 | 3149191 | T-G | HET | ||
| SBS | Chr6 | 14142104 | T-C | HOMO | ||
| SBS | Chr7 | 5387841 | C-T | HOMO | ||
| SBS | Chr7 | 8045463 | T-C | HOMO | ||
| SBS | Chr7 | 17895334 | C-A | HET | ||
| SBS | Chr7 | 27452691 | A-G | HET | ||
| SBS | Chr8 | 3602869 | A-G | HOMO | ||
| SBS | Chr8 | 10635626 | A-G | HET | ||
| SBS | Chr8 | 14767097 | C-G | HET | ||
| SBS | Chr9 | 1781830 | A-G | HOMO | ||
| SBS | Chr9 | 3654798 | C-T | HOMO | ||
| SBS | Chr9 | 4702805 | C-A | HOMO | ||
| SBS | Chr9 | 8257397 | A-T | HET | ||
| SBS | Chr9 | 11371125 | T-C | HET | ||
| SBS | Chr9 | 13011494 | G-A | HET | ||
| SBS | Chr9 | 17960173 | C-A | HOMO | ||
| SBS | Chr10 | 13580198 | A-T | HOMO | ||
| SBS | Chr11 | 435903 | G-T | HET | ||
| SBS | Chr11 | 435904 | C-T | HET | ||
| SBS | Chr11 | 435905 | G-T | HET | ||
| SBS | Chr11 | 928969 | C-T | HET | ||
| SBS | Chr11 | 13184734 | C-G | HET | ||
| SBS | Chr11 | 14055987 | T-A | HET | ||
| SBS | Chr11 | 15493881 | C-T | HET | ||
| SBS | Chr11 | 16251349 | G-A | HET | ||
| SBS | Chr11 | 20490884 | G-A | HET | ||
| SBS | Chr11 | 21283021 | C-T | HET | OsKitaake11g168500 | |
| SBS | Chr11 | 21661990 | C-T | HET | ||
| SBS | Chr11 | 29005714 | G-A | HET | ||
| SBS | Chr12 | 7373725 | A-G | HET | ||
| SBS | Chr12 | 14072786 | C-A | HET | ||
| SBS | Chr12 | 16543522 | C-A | HET | ||
| SBS | Chr12 | 20953826 | G-A | HET |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 2192143 | 2192143 | 1 | |
| Deletion | Chr10 | 2281114 | 2281115 | 2 | |
| Deletion | Chr7 | 5510346 | 5510346 | 1 | |
| Deletion | Chr5 | 5735588 | 5735588 | 1 | |
| Deletion | Chr6 | 6842966 | 6842978 | 13 | |
| Deletion | Chr2 | 8504136 | 8504142 | 7 | |
| Deletion | Chr4 | 9677018 | 9677022 | 5 | |
| Deletion | Chr3 | 10201902 | 10201912 | 11 | |
| Deletion | Chr4 | 10981744 | 10981744 | 1 | |
| Deletion | Chr10 | 13053001 | 13267000 | 214000 | 5 |
| Deletion | Chr6 | 13718177 | 13718177 | 1 | |
| Deletion | Chr4 | 18120370 | 18120462 | 93 | |
| Deletion | Chr3 | 19276003 | 19276006 | 4 | |
| Deletion | Chr3 | 19447324 | 19447325 | 2 | |
| Deletion | Chr7 | 20803850 | 20803853 | 4 | |
| Deletion | Chr5 | 23576864 | 23576876 | 13 | |
| Deletion | Chr11 | 24976769 | 24976770 | 2 | |
| Deletion | Chr11 | 25367393 | 25367393 | 1 | OsKitaake11g204000 |
| Deletion | Chr7 | 28175309 | 28175315 | 7 | |
| Deletion | Chr6 | 29592687 | 29592696 | 10 |
Insertions: 6
Inversions: 6
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 13151453 | Chr4 | 9662353 |