Search Kitaake

Mutant Information

Mutant Name	FN4558-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4558-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11394086 A-C HOMO
SBS Chr1 28629889 C-T HOMO
SBS Chr2 323649 A-T HOMO
SBS Chr2 6266126 A-G HOMO
SBS Chr2 7708747 T-C HET OsKitaake02g100800
SBS Chr2 10696878 C-T HET
SBS Chr2 10696879 T-A HET
SBS Chr2 12865145 T-C HET
SBS Chr3 21509757 G-A HET
SBS Chr3 32706748 G-A HOMO
SBS Chr4 1788359 C-T HET
SBS Chr4 4015826 G-A HET OsKitaake04g019500
SBS Chr4 7765016 G-C HET
SBS Chr4 9013844 C-T HET
SBS Chr4 9885052 G-A HET
SBS Chr4 10237104 C-T HET
SBS Chr4 10304531 G-A HET
SBS Chr4 10889362 G-A HET
SBS Chr5 1305797 T-G HET
SBS Chr5 9678330 C-A HOMO
SBS Chr5 21719256 A-T HET
SBS Chr5 21719257 C-T HET
SBS Chr5 21722709 G-A HET
SBS Chr5 21722715 G-C HET
SBS Chr6 18826665 G-A HET
SBS Chr6 18826666 G-A HET
SBS Chr6 18826667 G-A HET
SBS Chr7 5376781 C-T HET
SBS Chr7 13678241 G-A HET
SBS Chr7 15782368 C-T HET
SBS Chr7 18311967 C-T HET
SBS Chr7 22235800 G-A HET
SBS Chr8 2577412 C-T HOMO
SBS Chr8 16860766 A-T HET
SBS Chr8 28590266 C-T HOMO
SBS Chr11 11784803 C-T HOMO
SBS Chr12 24759643 C-T HOMO

Deletions: 34

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1410106 1410106 1
Deletion Chr10 1418797 1418797 1
Deletion Chr6 2370050 2370069 20
Deletion Chr12 3293017 3293020 4
Deletion Chr12 4210505 4210505 1 2
Deletion Chr2 4768983 4768993 11 OsKitaake02g066000
Deletion Chr12 4971688 4971696 9
Deletion Chr12 6230804 6230817 14
Deletion Chr6 7036919 7036922 4
Deletion Chr11 7291527 7291532 6
Deletion Chr3 8768250 8768251 2
Deletion Chr5 9938572 9938578 7
Deletion Chr12 10388446 10388450 5
Deletion Chr2 11948001 11989000 41000 5
Deletion Chr6 12715462 12715462 1
Deletion Chr5 15132588 15132607 20
Deletion Chr5 15723093 15723131 39
Deletion Chr1 16076781 16076782 2
Deletion Chr9 16519290 16519307 18
Deletion Chr8 18985994 18985995 2
Deletion Chr11 19268801 19268802 2
Deletion Chr7 19642770 19642770 1
Deletion Chr11 20162001 20238000 76000 3
Deletion Chr8 20829001 20858000 29000 4
Deletion Chr6 21922511 21922511 1
Deletion Chr1 25376001 25386000 10000 OsKitaake01g246100
Deletion Chr11 25505559 25505566 8
Deletion Chr7 26012138 26012139 2
Deletion Chr5 26570311 26570311 1
Deletion Chr3 27485378 27485378 1
Deletion Chr11 27510001 27538000 28000 5
Deletion Chr11 27710001 27732000 22000 2
Deletion Chr6 27729824 27729825 2
Deletion Chr4 36375908 36375908 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1340022 1340024 1
Insertion Chr7 6981558 6981560 1
Insertion Chr10 14097273 14097291 17
Insertion Chr6 26150977 26150979 1
Insertion Chr7 26359796 26359799 2
Insertion Chr9 19213436 19213438 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 27509766 27709991 OsKitaake11g226250
Inversion Chr11 27538574 27731948 OsKitaake11g226300

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4530761 Chr7 12592762
Translocation Chr10 4530765 Chr7 12594272
Translocation Chr11 27538258 Chr7 8592036 2
Translocation Chr11 27538562 Chr7 8592035 OsKitaake07g092250

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11394086	A-C	HOMO
SBS	Chr1	28629889	C-T	HOMO
SBS	Chr2	323649	A-T	HOMO
SBS	Chr2	6266126	A-G	HOMO
SBS	Chr2	7708747	T-C	HET		OsKitaake02g100800
SBS	Chr2	10696878	C-T	HET
SBS	Chr2	10696879	T-A	HET
SBS	Chr2	12865145	T-C	HET
SBS	Chr3	21509757	G-A	HET
SBS	Chr3	32706748	G-A	HOMO
SBS	Chr4	1788359	C-T	HET
SBS	Chr4	4015826	G-A	HET		OsKitaake04g019500
SBS	Chr4	7765016	G-C	HET
SBS	Chr4	9013844	C-T	HET
SBS	Chr4	9885052	G-A	HET
SBS	Chr4	10237104	C-T	HET
SBS	Chr4	10304531	G-A	HET
SBS	Chr4	10889362	G-A	HET
SBS	Chr5	1305797	T-G	HET
SBS	Chr5	9678330	C-A	HOMO
SBS	Chr5	21719256	A-T	HET
SBS	Chr5	21719257	C-T	HET
SBS	Chr5	21722709	G-A	HET
SBS	Chr5	21722715	G-C	HET
SBS	Chr6	18826665	G-A	HET
SBS	Chr6	18826666	G-A	HET
SBS	Chr6	18826667	G-A	HET
SBS	Chr7	5376781	C-T	HET
SBS	Chr7	13678241	G-A	HET
SBS	Chr7	15782368	C-T	HET
SBS	Chr7	18311967	C-T	HET
SBS	Chr7	22235800	G-A	HET
SBS	Chr8	2577412	C-T	HOMO
SBS	Chr8	16860766	A-T	HET
SBS	Chr8	28590266	C-T	HOMO
SBS	Chr11	11784803	C-T	HOMO
SBS	Chr12	24759643	C-T	HOMO

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1410106	1410106	1
Deletion	Chr10	1418797	1418797	1
Deletion	Chr6	2370050	2370069	20
Deletion	Chr12	3293017	3293020	4
Deletion	Chr12	4210505	4210505	1	2
Deletion	Chr2	4768983	4768993	11	OsKitaake02g066000
Deletion	Chr12	4971688	4971696	9
Deletion	Chr12	6230804	6230817	14
Deletion	Chr6	7036919	7036922	4
Deletion	Chr11	7291527	7291532	6
Deletion	Chr3	8768250	8768251	2
Deletion	Chr5	9938572	9938578	7
Deletion	Chr12	10388446	10388450	5
Deletion	Chr2	11948001	11989000	41000	5
Deletion	Chr6	12715462	12715462	1
Deletion	Chr5	15132588	15132607	20
Deletion	Chr5	15723093	15723131	39
Deletion	Chr1	16076781	16076782	2
Deletion	Chr9	16519290	16519307	18
Deletion	Chr8	18985994	18985995	2
Deletion	Chr11	19268801	19268802	2
Deletion	Chr7	19642770	19642770	1
Deletion	Chr11	20162001	20238000	76000	3
Deletion	Chr8	20829001	20858000	29000	4
Deletion	Chr6	21922511	21922511	1
Deletion	Chr1	25376001	25386000	10000	OsKitaake01g246100
Deletion	Chr11	25505559	25505566	8
Deletion	Chr7	26012138	26012139	2
Deletion	Chr5	26570311	26570311	1
Deletion	Chr3	27485378	27485378	1
Deletion	Chr11	27510001	27538000	28000	5
Deletion	Chr11	27710001	27732000	22000	2
Deletion	Chr6	27729824	27729825	2
Deletion	Chr4	36375908	36375908	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	27509766	27709991	OsKitaake11g226250
Inversion	Chr11	27538574	27731948	OsKitaake11g226300

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes