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| Mutant Information |
|---|
| Mutant Name | FN4559-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4559-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 44
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2612206 | G-C | HET | ||
| SBS | Chr1 | 7848237 | T-G | HET | ||
| SBS | Chr1 | 20178937 | G-A | HET | ||
| SBS | Chr1 | 29765450 | C-T | HOMO | ||
| SBS | Chr2 | 3216477 | G-A | HET | ||
| SBS | Chr2 | 3216478 | C-A | HET | ||
| SBS | Chr2 | 4629375 | T-A | HET | ||
| SBS | Chr2 | 16075884 | T-A | HET | OsKitaake02g166300 | |
| SBS | Chr2 | 18710600 | G-A | HET | ||
| SBS | Chr2 | 24875751 | T-A | HET | ||
| SBS | Chr2 | 28087600 | T-A | HET | ||
| SBS | Chr2 | 28087601 | G-A | HET | ||
| SBS | Chr2 | 36510758 | T-G | HET | ||
| SBS | Chr3 | 7103596 | G-T | HET | ||
| SBS | Chr3 | 25180271 | G-T | HET | ||
| SBS | Chr3 | 25944919 | A-T | HET | OsKitaake03g273600 | |
| SBS | Chr3 | 30084677 | A-G | HOMO | ||
| SBS | Chr3 | 35867369 | T-A | HET | ||
| SBS | Chr3 | 35867370 | C-A | HET | ||
| SBS | Chr4 | 922762 | C-G | HET | ||
| SBS | Chr4 | 9793573 | C-T | HOMO | ||
| SBS | Chr4 | 10568088 | A-G | HOMO | ||
| SBS | Chr4 | 18777491 | G-T | HOMO | ||
| SBS | Chr4 | 28761405 | C-G | HET | ||
| SBS | Chr4 | 31573641 | G-T | HET | ||
| SBS | Chr5 | 15811618 | T-A | HOMO | ||
| SBS | Chr5 | 18571544 | T-A | HOMO | ||
| SBS | Chr5 | 30021517 | G-C | HET | ||
| SBS | Chr6 | 9623440 | G-A | HET | ||
| SBS | Chr7 | 4105849 | A-C | HOMO | ||
| SBS | Chr7 | 14134817 | C-T | HOMO | ||
| SBS | Chr8 | 9366986 | C-G | HET | ||
| SBS | Chr8 | 16806994 | C-T | HET | ||
| SBS | Chr8 | 21023310 | T-A | HET | ||
| SBS | Chr9 | 9209070 | T-C | HET | ||
| SBS | Chr9 | 19167607 | C-T | HET | ||
| SBS | Chr9 | 20851097 | C-G | HET | ||
| SBS | Chr10 | 4586541 | G-A | HET | ||
| SBS | Chr10 | 9001902 | A-G | HET | ||
| SBS | Chr11 | 4855115 | A-T | HOMO | ||
| SBS | Chr11 | 9898120 | T-A | HOMO | ||
| SBS | Chr11 | 12005146 | T-A | HOMO | ||
| SBS | Chr11 | 16471623 | A-G | HET | ||
| SBS | Chr11 | 25459685 | G-A | HOMO |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2482913 | 2482913 | 1 | |
| Deletion | Chr1 | 8831730 | 8831730 | 1 | |
| Deletion | Chr1 | 9191326 | 9191326 | 1 | |
| Deletion | Chr4 | 10577706 | 10577709 | 4 | |
| Deletion | Chr1 | 13440389 | 13440395 | 7 | |
| Deletion | Chr7 | 13864001 | 13880000 | 16000 | OsKitaake07g120500 |
| Deletion | Chr12 | 14591280 | 14591291 | 12 | |
| Deletion | Chr7 | 16479958 | 16479958 | 1 | |
| Deletion | Chr11 | 19249296 | 19249298 | 3 | |
| Deletion | Chr4 | 20141042 | 20141047 | 6 | |
| Deletion | Chr11 | 20937319 | 20937319 | 1 | |
| Deletion | Chr3 | 21139812 | 21139812 | 1 | |
| Deletion | Chr2 | 22989615 | 22989615 | 1 | |
| Deletion | Chr1 | 23958145 | 23958145 | 1 | |
| Deletion | Chr8 | 28506548 | 28506549 | 2 | |
| Deletion | Chr5 | 29960645 | 29960645 | 1 | |
| Deletion | Chr1 | 36774095 | 36774095 | 1 |
Insertions: 7
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 16260825 | 16891206 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 9262189 | Chr2 | 15203934 | |
| Translocation | Chr10 | 12693365 | Chr6 | 14095784 | 2 |