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Mutant Information

Mutant Name	FN456-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN456-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16520716 C-T Hetero INTERGENIC
SBS Chr1 29369413 A-T Hetero INTERGENIC
SBS Chr1 31282222 A-G Hetero INTERGENIC
SBS Chr1 37648735 T-C Homo INTRON
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr2 15364546 G-A Homo INTERGENIC
SBS Chr2 17095981 G-T Hetero INTERGENIC
SBS Chr3 327158 A-T Homo INTERGENIC
SBS Chr3 35734684 T-G Hetero UTR_3_PRIME
SBS Chr3 36224927 G-A Hetero INTERGENIC
SBS Chr4 11479140 C-T Homo INTERGENIC
SBS Chr4 13066209 C-T Homo INTERGENIC
SBS Chr4 26207087 T-A Hetero INTERGENIC
SBS Chr4 26207088 T-A Hetero INTERGENIC
SBS Chr4 26510265 T-C Hetero INTERGENIC
SBS Chr4 28396958 G-C Hetero INTERGENIC
SBS Chr4 32487990 T-G Hetero INTRON
SBS Chr5 9132169 C-T Homo INTERGENIC
SBS Chr5 16528088 T-C Hetero INTERGENIC
SBS Chr5 17319013 T-A Hetero INTERGENIC
SBS Chr6 2691642 G-A Hetero INTERGENIC
SBS Chr6 8840694 A-T Hetero INTERGENIC
SBS Chr7 14396634 C-T Homo INTERGENIC
SBS Chr7 20709901 C-T Hetero INTERGENIC
SBS Chr8 11289501 C-A Hetero INTERGENIC
SBS Chr8 12843612 G-C Hetero INTERGENIC
SBS Chr8 20807855 A-T Hetero INTERGENIC
SBS Chr8 26165787 C-T Hetero INTRON
SBS Chr9 2141895 T-G Hetero INTERGENIC
SBS Chr9 9729076 T-C Hetero INTERGENIC
SBS Chr10 5813553 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 17322377 A-G Hetero INTERGENIC
SBS Chr10 20547966 A-G Hetero INTERGENIC
SBS Chr10 20920030 T-A Hetero INTERGENIC
SBS Chr10 23613762 T-A Hetero INTERGENIC
SBS Chr11 27233318 T-C Hetero INTERGENIC
SBS Chr11 28999933 T-G Homo NON_SYNONYMOUS_CODING OsKitaake11g237500
SBS Chr12 5464328 G-A Hetero INTERGENIC
SBS Chr12 8493162 G-T Homo INTERGENIC
SBS Chr12 14225185 G-A Homo INTERGENIC
SBS Chr12 17474056 A-C Hetero INTERGENIC
SBS Chr12 19051634 G-T Homo INTERGENIC
SBS Chr12 26786295 G-C Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1664024 1664027 3
Deletion Chr12 11715032 11715517 485
Deletion Chr9 11742467 11742469 2
Deletion Chr9 12633574 12633576 2
Deletion Chr12 13415001 13435000 19999 2
Deletion Chr3 15270636 15270637 1
Deletion Chr2 16352231 16352242 11
Deletion Chr10 19595770 19595773 3
Deletion Chr3 21361920 21361923 3
Deletion Chr6 22610770 22610771 1
Deletion Chr3 23132816 23132827 11
Deletion Chr2 25605671 25605677 6
Deletion Chr11 26043001 26156000 112999 12
Deletion Chr3 28417554 28417557 3
Deletion Chr7 28422194 28422195 1
Deletion Chr4 31630688 31630693 5
Deletion Chr1 31738001 31738006 5
Deletion Chr1 31962465 31962469 4
Deletion Chr2 33749742 33749756 14
Deletion Chr4 35403770 35403771 1
Deletion Chr1 39444018 39444031 13

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4019689 4019694 4
Insertion Chr5 2837653 2837656 2
Insertion Chr6 2211286 2211291 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 6591985 6614107 OsKitaake06g086300
Inversion Chr6 6591993 6614109 OsKitaake06g086300

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 21108358 Chr6 8617808

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16520716	C-T	Hetero	INTERGENIC
SBS	Chr1	29369413	A-T	Hetero	INTERGENIC
SBS	Chr1	31282222	A-G	Hetero	INTERGENIC
SBS	Chr1	37648735	T-C	Homo	INTRON
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr2	15364546	G-A	Homo	INTERGENIC
SBS	Chr2	17095981	G-T	Hetero	INTERGENIC
SBS	Chr3	327158	A-T	Homo	INTERGENIC
SBS	Chr3	35734684	T-G	Hetero	UTR_3_PRIME
SBS	Chr3	36224927	G-A	Hetero	INTERGENIC
SBS	Chr4	11479140	C-T	Homo	INTERGENIC
SBS	Chr4	13066209	C-T	Homo	INTERGENIC
SBS	Chr4	26207087	T-A	Hetero	INTERGENIC
SBS	Chr4	26207088	T-A	Hetero	INTERGENIC
SBS	Chr4	26510265	T-C	Hetero	INTERGENIC
SBS	Chr4	28396958	G-C	Hetero	INTERGENIC
SBS	Chr4	32487990	T-G	Hetero	INTRON
SBS	Chr5	9132169	C-T	Homo	INTERGENIC
SBS	Chr5	16528088	T-C	Hetero	INTERGENIC
SBS	Chr5	17319013	T-A	Hetero	INTERGENIC
SBS	Chr6	2691642	G-A	Hetero	INTERGENIC
SBS	Chr6	8840694	A-T	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Homo	INTERGENIC
SBS	Chr7	20709901	C-T	Hetero	INTERGENIC
SBS	Chr8	11289501	C-A	Hetero	INTERGENIC
SBS	Chr8	12843612	G-C	Hetero	INTERGENIC
SBS	Chr8	20807855	A-T	Hetero	INTERGENIC
SBS	Chr8	26165787	C-T	Hetero	INTRON
SBS	Chr9	2141895	T-G	Hetero	INTERGENIC
SBS	Chr9	9729076	T-C	Hetero	INTERGENIC
SBS	Chr10	5813553	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	17322377	A-G	Hetero	INTERGENIC
SBS	Chr10	20547966	A-G	Hetero	INTERGENIC
SBS	Chr10	20920030	T-A	Hetero	INTERGENIC
SBS	Chr10	23613762	T-A	Hetero	INTERGENIC
SBS	Chr11	27233318	T-C	Hetero	INTERGENIC
SBS	Chr11	28999933	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g237500
SBS	Chr12	5464328	G-A	Hetero	INTERGENIC
SBS	Chr12	8493162	G-T	Homo	INTERGENIC
SBS	Chr12	14225185	G-A	Homo	INTERGENIC
SBS	Chr12	17474056	A-C	Hetero	INTERGENIC
SBS	Chr12	19051634	G-T	Homo	INTERGENIC
SBS	Chr12	26786295	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1664024	1664027	3
Deletion	Chr12	11715032	11715517	485
Deletion	Chr9	11742467	11742469	2
Deletion	Chr9	12633574	12633576	2
Deletion	Chr12	13415001	13435000	19999	2
Deletion	Chr3	15270636	15270637	1
Deletion	Chr2	16352231	16352242	11
Deletion	Chr10	19595770	19595773	3
Deletion	Chr3	21361920	21361923	3
Deletion	Chr6	22610770	22610771	1
Deletion	Chr3	23132816	23132827	11
Deletion	Chr2	25605671	25605677	6
Deletion	Chr11	26043001	26156000	112999	12
Deletion	Chr3	28417554	28417557	3
Deletion	Chr7	28422194	28422195	1
Deletion	Chr4	31630688	31630693	5
Deletion	Chr1	31738001	31738006	5
Deletion	Chr1	31962465	31962469	4
Deletion	Chr2	33749742	33749756	14
Deletion	Chr4	35403770	35403771	1
Deletion	Chr1	39444018	39444031	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6591985	6614107	OsKitaake06g086300
Inversion	Chr6	6591993	6614109	OsKitaake06g086300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes