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| Mutant Information |
|---|
| Mutant Name | FN4560-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4560-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14402442 | G-T | HET | ||
| SBS | Chr1 | 14854639 | G-A | HET | ||
| SBS | Chr1 | 22931675 | A-C | HET | ||
| SBS | Chr3 | 24899098 | A-G | HOMO | ||
| SBS | Chr3 | 26233916 | G-C | HET | ||
| SBS | Chr4 | 1535892 | G-T | HOMO | ||
| SBS | Chr4 | 2889533 | C-A | HET | ||
| SBS | Chr4 | 7383008 | G-A | HET | ||
| SBS | Chr4 | 36578721 | G-A | HOMO | ||
| SBS | Chr5 | 12038771 | C-T | HOMO | ||
| SBS | Chr5 | 15698642 | T-A | HOMO | ||
| SBS | Chr5 | 21239939 | A-G | HOMO | ||
| SBS | Chr5 | 23088119 | G-A | HOMO | OsKitaake05g192100 | |
| SBS | Chr5 | 29984162 | T-C | HOMO | ||
| SBS | Chr6 | 953787 | T-C | HET | ||
| SBS | Chr6 | 28281183 | A-G | HOMO | ||
| SBS | Chr7 | 2979669 | C-T | HET | ||
| SBS | Chr7 | 6465538 | C-T | HET | ||
| SBS | Chr7 | 27529875 | T-A | HET | OsKitaake07g256000 | |
| SBS | Chr8 | 3576250 | C-A | HET | ||
| SBS | Chr8 | 20976356 | A-C | HET | ||
| SBS | Chr10 | 4980981 | T-A | HET | ||
| SBS | Chr10 | 6774088 | C-G | HET | ||
| SBS | Chr10 | 11535726 | G-A | HET | ||
| SBS | Chr10 | 21095322 | G-C | HET | ||
| SBS | Chr11 | 10612348 | G-T | HET | ||
| SBS | Chr11 | 13659842 | G-T | HET | ||
| SBS | Chr11 | 23072694 | C-G | HET | OsKitaake11g183000 | |
| SBS | Chr11 | 23893329 | G-A | HET | ||
| SBS | Chr11 | 28051483 | C-A | HET | ||
| SBS | Chr12 | 6264786 | C-T | HET | ||
| SBS | Chr12 | 12395829 | A-G | HET | ||
| SBS | Chr12 | 13440103 | C-A | HET | ||
| SBS | Chr12 | 24633754 | G-C | HET |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2736389 | 2736539 | 151 | |
| Deletion | Chr5 | 4740115 | 4740116 | 2 | |
| Deletion | Chr9 | 5709714 | 5709714 | 1 | |
| Deletion | Chr5 | 9380050 | 9380054 | 5 | |
| Deletion | Chr11 | 15166389 | 15166389 | 1 | |
| Deletion | Chr9 | 18720454 | 18720465 | 12 | OsKitaake09g148500 |
| Deletion | Chr6 | 19058275 | 19058285 | 11 | |
| Deletion | Chr12 | 20099791 | 20099808 | 18 | |
| Deletion | Chr11 | 20329105 | 20329106 | 2 | |
| Deletion | Chr11 | 21178001 | 21335000 | 157000 | 9 |
| Deletion | Chr1 | 23310843 | 23310844 | 2 | |
| Deletion | Chr6 | 27642802 | 27642806 | 5 | |
| Deletion | Chr11 | 29194355 | 29194356 | 2 | |
| Deletion | Chr2 | 31626378 | 31626383 | 6 | |
| Deletion | Chr4 | 31793001 | 31944000 | 151000 | 15 |
| Deletion | Chr4 | 31968001 | 32962000 | 994000 | 132 |
| Deletion | Chr4 | 36427221 | 36427227 | 7 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 27034052 | 27034054 | 1 | |
| Insertion | Chr6 | 885234 | 885236 | 1 | |
| Insertion | Chr6 | 1820279 | 1820281 | 1 | |
| Insertion | Chr6 | 8055376 | 8055389 | 12 | |
| Insertion | Chr9 | 22279559 | 22279566 | 6 | |
| Insertion | Chr10 | 14913381 | 14913383 | 1 | OsKitaake10g093200  |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 24398488 | 24646012 | |
| Inversion | Chr5 | 24398491 | 24646016 | |
| Inversion | Chr2 | 36187258 | 36759930 | OsKitaake02g392500 |
| Inversion | Chr2 | 36187296 | 36759971 | OsKitaake02g392500 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 30199315 | Chr1 | 26993141 | OsKitaake04g232400 |
| Translocation | Chr4 | 30199318 | Chr1 | 26993255 | OsKitaake04g232400 |