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| Mutant Information |
|---|
| Mutant Name | FN4562-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4562-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5206797 | C-T | HET | ||
| SBS | Chr2 | 11602041 | G-A | HET | ||
| SBS | Chr2 | 13127599 | C-G | HET | ||
| SBS | Chr3 | 4811004 | A-G | HET | ||
| SBS | Chr3 | 7720214 | T-G | HET | ||
| SBS | Chr4 | 6084371 | C-T | HET | ||
| SBS | Chr4 | 17554229 | C-T | HET | ||
| SBS | Chr5 | 7533236 | T-A | HET | ||
| SBS | Chr5 | 18210937 | C-A | HET | ||
| SBS | Chr5 | 18652403 | T-C | HOMO | ||
| SBS | Chr6 | 12611697 | C-A | HET | ||
| SBS | Chr6 | 16815851 | G-A | HET | ||
| SBS | Chr6 | 21160043 | T-C | HET | ||
| SBS | Chr7 | 1480046 | G-A | HET | ||
| SBS | Chr7 | 24968286 | G-A | HET | ||
| SBS | Chr7 | 25518306 | C-T | HET | ||
| SBS | Chr9 | 17312026 | C-A | HET | ||
| SBS | Chr10 | 1452888 | A-T | HOMO | ||
| SBS | Chr10 | 1452889 | G-T | HOMO | ||
| SBS | Chr10 | 1452890 | A-T | HOMO | ||
| SBS | Chr10 | 2866139 | G-T | HET | ||
| SBS | Chr12 | 7759108 | C-T | HET | ||
| SBS | Chr12 | 8008098 | A-T | HET | ||
| SBS | Chr12 | 8008099 | C-T | HET | ||
| SBS | Chr12 | 9229480 | G-A | HET | ||
| SBS | Chr12 | 23034113 | C-A | HET | ||
| SBS | Chr12 | 24902688 | C-T | HET |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1731413 | 1731413 | 1 | |
| Deletion | Chr12 | 1735789 | 1735799 | 11 | |
| Deletion | Chr12 | 1838904 | 1838906 | 3 | OsKitaake12g028000 |
| Deletion | Chr9 | 3571999 | 3572003 | 5 | |
| Deletion | Chr12 | 3947022 | 3947040 | 19 | |
| Deletion | Chr5 | 5133510 | 5133512 | 3 | OsKitaake05g057000 |
| Deletion | Chr4 | 7443753 | 7443753 | 1 | 2 |
| Deletion | Chr3 | 9364156 | 9364156 | 1 | |
| Deletion | Chr7 | 14373157 | 14373157 | 1 | |
| Deletion | Chr6 | 17508202 | 17508212 | 11 | |
| Deletion | Chr5 | 19223230 | 19223230 | 1 | |
| Deletion | Chr8 | 20446818 | 20446825 | 8 | |
| Deletion | Chr7 | 24885282 | 24885284 | 3 | OsKitaake07g222800 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 29432174 | 29432176 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 4883966 | 5791069 | OsKitaake10g035200 |
| Inversion | Chr10 | 4883981 | 5791073 | OsKitaake10g035200 |
| Inversion | Chr4 | 8249651 | 8255175 | |
| Inversion | Chr5 | 28669293 | 28677093 | OsKitaake05g269300 |
| Inversion | Chr5 | 28669305 | 28677093 | OsKitaake05g269300 |
| Inversion | Chr1 | 31420415 | 31947095 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 6071682 | Chr3 | 33635784 | |
| Translocation | Chr7 | 6071900 | Chr3 | 33635781 |