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| Mutant Information |
|---|
| Mutant Name | FN4563-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4563-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 12894379 | C-T | HET | ||
| SBS | Chr3 | 1903937 | C-T | HET | ||
| SBS | Chr4 | 12562338 | T-A | HET | ||
| SBS | Chr4 | 12562339 | A-T | HET | ||
| SBS | Chr4 | 12562341 | C-A | HET | ||
| SBS | Chr4 | 14029537 | A-T | HET | OsKitaake04g067250 | |
| SBS | Chr4 | 16396504 | G-A | HET | ||
| SBS | Chr4 | 16919099 | C-A | HOMO | ||
| SBS | Chr4 | 35417870 | C-T | HET | ||
| SBS | Chr5 | 2423501 | C-T | HOMO | OsKitaake05g027400 | |
| SBS | Chr6 | 2967184 | C-T | HET | ||
| SBS | Chr6 | 8177170 | G-A | HOMO | ||
| SBS | Chr6 | 18168806 | T-C | HOMO | ||
| SBS | Chr6 | 26936292 | T-A | HET | ||
| SBS | Chr8 | 7134153 | G-A | HET | ||
| SBS | Chr8 | 22770560 | C-T | HET | ||
| SBS | Chr9 | 2727203 | G-A | HET | ||
| SBS | Chr9 | 9317056 | C-T | HET | ||
| SBS | Chr9 | 11734924 | T-A | HET | ||
| SBS | Chr9 | 11734925 | G-A | HET | OsKitaake09g074800 | |
| SBS | Chr9 | 12741286 | T-C | HET | ||
| SBS | Chr10 | 4870944 | G-A | HOMO | ||
| SBS | Chr10 | 7993746 | A-G | HOMO | ||
| SBS | Chr10 | 8856835 | G-A | HOMO | ||
| SBS | Chr10 | 11150879 | C-T | HOMO | ||
| SBS | Chr10 | 14866196 | C-T | HOMO | ||
| SBS | Chr11 | 15110389 | C-T | HET | ||
| SBS | Chr12 | 26612565 | C-T | HET |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 536983 | 536986 | 4 | |
| Deletion | Chr11 | 1675270 | 1675274 | 5 | |
| Deletion | Chr1 | 4451991 | 4452075 | 85 | |
| Deletion | Chr1 | 5369959 | 5369965 | 7 | |
| Deletion | Chr12 | 10371903 | 10371903 | 1 | |
| Deletion | Chr1 | 13849114 | 13849114 | 1 | |
| Deletion | Chr9 | 15199090 | 15199093 | 4 | OsKitaake09g106100 |
| Deletion | Chr6 | 17753707 | 17753707 | 1 | |
| Deletion | Chr6 | 24012680 | 24012681 | 2 | |
| Deletion | Chr6 | 24099638 | 24099638 | 1 | |
| Deletion | Chr3 | 30828685 | 30828687 | 3 | |
| Deletion | Chr3 | 31430918 | 31430918 | 1 | |
| Deletion | Chr3 | 32393963 | 32393963 | 1 | |
| Deletion | Chr1 | 33692823 | 33692823 | 1 | |
| Deletion | Chr3 | 36571279 | 36571293 | 15 |
Insertions: 9
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 9969153 | 10725711 | OsKitaake01g126200 |
| Inversion | Chr1 | 9969168 | 10725721 | OsKitaake01g126200 |
| Inversion | Chr9 | 19225056 | 19225305 | |
| Inversion | Chr4 | 23163463 | 23191052 | |
| Inversion | Chr4 | 23163470 | 23191063 | OsKitaake04g141400 |
| Inversion | Chr5 | 24372353 | 24372479 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 30866891 | Chr4 | 17292963 | |
| Translocation | Chr6 | 30866899 | Chr4 | 17292352 |