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Mutant Information

Mutant Name	FN4564-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4564-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4322573 C-T HOMO OsKitaake01g057500
SBS Chr1 11550007 G-A HET
SBS Chr1 22688441 C-T HET
SBS Chr1 41129777 A-T HET
SBS Chr2 6461644 G-A HET
SBS Chr2 34538379 C-A HET
SBS Chr3 19164890 G-T HET
SBS Chr3 21969096 C-T HOMO
SBS Chr4 1513423 G-A HET
SBS Chr5 5923931 G-T HET
SBS Chr5 20909579 C-T HET
SBS Chr5 27279441 C-T HET
SBS Chr6 18123568 C-A HET
SBS Chr6 28230167 C-T HET
SBS Chr7 7595993 C-T HET
SBS Chr7 9715339 G-T HET
SBS Chr7 12635301 C-T HET
SBS Chr7 15543693 G-T HET
SBS Chr8 3490193 G-A HET
SBS Chr10 4448080 T-C HOMO OsKitaake10g033125
SBS Chr10 11644891 T-C HOMO OsKitaake10g069300
SBS Chr11 7867330 C-A HET
SBS Chr11 14313396 T-C HET
SBS Chr11 23337411 C-G HET

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3455305 3455305 1
Deletion Chr10 5967010 5967032 23
Deletion Chr12 8726154 8726154 1
Deletion Chr8 8876518 8876518 1
Deletion Chr2 10098630 10098630 1
Deletion Chr6 11209343 11209343 1
Deletion Chr1 11757372 11757372 1
Deletion Chr8 13125996 13125999 4
Deletion Chr8 16572737 16572743 7
Deletion Chr5 16992580 16992580 1 OsKitaake05g130400
Deletion Chr5 19165001 19193000 28000 3
Deletion Chr12 20081359 20081359 1
Deletion Chr5 20611141 20611141 1
Deletion Chr8 21836962 21836966 5
Deletion Chr8 22675421 22675426 6 OsKitaake08g174000
Deletion Chr4 23116001 23135000 19000 OsKitaake04g140900
Deletion Chr4 24061702 24061702 1
Deletion Chr1 24136411 24136411 1
Deletion Chr6 25589282 25589282 1
Deletion Chr11 25854162 25854184 23
Deletion Chr11 26286397 26286402 6
Deletion Chr2 26661022 26661027 6 OsKitaake02g266500
Deletion Chr4 26664612 26664615 4
Deletion Chr11 26691802 26691803 2
Deletion Chr5 28053185 28053196 12 OsKitaake05g259100
Deletion Chr2 30602361 30602362 2
Deletion Chr2 34392912 34392918 7 OsKitaake02g357600
Deletion Chr4 36351731 36351731 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1830751 1830794 42
Insertion Chr2 34698944 34698946 1
Insertion Chr6 18035046 18035049 2
Insertion Chr8 22787830 22787832 1
Insertion Chr11 9808797 9808799 1
Insertion Chr11 29073593 29073596 2
Insertion Chr5 26886923 26886925 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 4064056 4589615 OsKitaake07g057200
Inversion Chr6 7949677 7977055
Inversion Chr6 7949688 7977055
Inversion Chr8 14672133 14672329
Inversion Chr4 22893574 23116127 OsKitaake04g140900
Inversion Chr1 29537735 29627312 OsKitaake01g289300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 26015038 Chr2 2090600
Translocation Chr6 26015040 Chr2 2086315

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4322573	C-T	HOMO		OsKitaake01g057500
SBS	Chr1	11550007	G-A	HET
SBS	Chr1	22688441	C-T	HET
SBS	Chr1	41129777	A-T	HET
SBS	Chr2	6461644	G-A	HET
SBS	Chr2	34538379	C-A	HET
SBS	Chr3	19164890	G-T	HET
SBS	Chr3	21969096	C-T	HOMO
SBS	Chr4	1513423	G-A	HET
SBS	Chr5	5923931	G-T	HET
SBS	Chr5	20909579	C-T	HET
SBS	Chr5	27279441	C-T	HET
SBS	Chr6	18123568	C-A	HET
SBS	Chr6	28230167	C-T	HET
SBS	Chr7	7595993	C-T	HET
SBS	Chr7	9715339	G-T	HET
SBS	Chr7	12635301	C-T	HET
SBS	Chr7	15543693	G-T	HET
SBS	Chr8	3490193	G-A	HET
SBS	Chr10	4448080	T-C	HOMO		OsKitaake10g033125
SBS	Chr10	11644891	T-C	HOMO		OsKitaake10g069300
SBS	Chr11	7867330	C-A	HET
SBS	Chr11	14313396	T-C	HET
SBS	Chr11	23337411	C-G	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3455305	3455305	1
Deletion	Chr10	5967010	5967032	23
Deletion	Chr12	8726154	8726154	1
Deletion	Chr8	8876518	8876518	1
Deletion	Chr2	10098630	10098630	1
Deletion	Chr6	11209343	11209343	1
Deletion	Chr1	11757372	11757372	1
Deletion	Chr8	13125996	13125999	4
Deletion	Chr8	16572737	16572743	7
Deletion	Chr5	16992580	16992580	1	OsKitaake05g130400
Deletion	Chr5	19165001	19193000	28000	3
Deletion	Chr12	20081359	20081359	1
Deletion	Chr5	20611141	20611141	1
Deletion	Chr8	21836962	21836966	5
Deletion	Chr8	22675421	22675426	6	OsKitaake08g174000
Deletion	Chr4	23116001	23135000	19000	OsKitaake04g140900
Deletion	Chr4	24061702	24061702	1
Deletion	Chr1	24136411	24136411	1
Deletion	Chr6	25589282	25589282	1
Deletion	Chr11	25854162	25854184	23
Deletion	Chr11	26286397	26286402	6
Deletion	Chr2	26661022	26661027	6	OsKitaake02g266500
Deletion	Chr4	26664612	26664615	4
Deletion	Chr11	26691802	26691803	2
Deletion	Chr5	28053185	28053196	12	OsKitaake05g259100
Deletion	Chr2	30602361	30602362	2
Deletion	Chr2	34392912	34392918	7	OsKitaake02g357600
Deletion	Chr4	36351731	36351731	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4064056	4589615	OsKitaake07g057200
Inversion	Chr6	7949677	7977055
Inversion	Chr6	7949688	7977055
Inversion	Chr8	14672133	14672329
Inversion	Chr4	22893574	23116127	OsKitaake04g140900
Inversion	Chr1	29537735	29627312	OsKitaake01g289300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes