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| Mutant Information |
|---|
| Mutant Name | FN4565-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4565-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 43
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2829591 | A-G | HOMO | ||
| SBS | Chr1 | 5833228 | G-A | HET | ||
| SBS | Chr1 | 20929549 | C-A | HET | OsKitaake01g204900 | |
| SBS | Chr1 | 27043605 | A-T | HET | OsKitaake01g263100 | |
| SBS | Chr1 | 27043606 | A-T | HET | OsKitaake01g263100 | |
| SBS | Chr1 | 35244500 | C-T | HET | ||
| SBS | Chr2 | 12418223 | G-A | HET | ||
| SBS | Chr2 | 20136191 | A-T | HET | ||
| SBS | Chr2 | 20136213 | G-A | HET | ||
| SBS | Chr3 | 24738458 | G-T | HET | ||
| SBS | Chr3 | 31668273 | C-T | HET | ||
| SBS | Chr3 | 35709383 | C-T | HET | ||
| SBS | Chr3 | 35709392 | G-A | HET | ||
| SBS | Chr3 | 35709393 | A-T | HET | ||
| SBS | Chr4 | 4399987 | G-A | HET | ||
| SBS | Chr4 | 9512419 | C-A | HOMO | ||
| SBS | Chr4 | 9512423 | A-G | HOMO | ||
| SBS | Chr4 | 21864317 | G-A | HET | ||
| SBS | Chr4 | 23970405 | C-T | HET | ||
| SBS | Chr4 | 24456244 | T-C | HET | ||
| SBS | Chr4 | 27464297 | A-C | HOMO | ||
| SBS | Chr4 | 30541028 | G-A | HOMO | ||
| SBS | Chr5 | 1948904 | T-C | HET | ||
| SBS | Chr5 | 6221509 | G-A | HET | ||
| SBS | Chr5 | 20070085 | G-A | HET | ||
| SBS | Chr6 | 2466160 | C-T | HOMO | ||
| SBS | Chr7 | 2325918 | C-T | HET | ||
| SBS | Chr7 | 15325666 | T-C | HET | ||
| SBS | Chr8 | 5065192 | A-G | HOMO | ||
| SBS | Chr8 | 9123202 | T-C | HET | ||
| SBS | Chr8 | 18238727 | C-A | HOMO | ||
| SBS | Chr8 | 21006953 | A-G | HET | ||
| SBS | Chr8 | 23953595 | T-G | HOMO | ||
| SBS | Chr8 | 25085855 | T-C | HET | ||
| SBS | Chr9 | 4305993 | C-T | HET | ||
| SBS | Chr9 | 17818477 | G-A | HET | ||
| SBS | Chr10 | 889054 | T-G | HET | ||
| SBS | Chr10 | 892591 | T-A | HET | ||
| SBS | Chr10 | 7445494 | G-A | HOMO | ||
| SBS | Chr10 | 15283201 | G-A | HET | ||
| SBS | Chr11 | 4079429 | C-T | HET | OsKitaake11g055500 | |
| SBS | Chr11 | 16005435 | C-T | HET | ||
| SBS | Chr12 | 13763527 | G-A | HET |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2483381 | 2483381 | 1 | |
| Deletion | Chr6 | 5754343 | 5754346 | 4 | |
| Deletion | Chr11 | 6648622 | 6648632 | 11 | OsKitaake11g079000 |
| Deletion | Chr1 | 6834780 | 6834783 | 4 | |
| Deletion | Chr4 | 8233178 | 8233186 | 9 | |
| Deletion | Chr4 | 9138906 | 9138920 | 15 | |
| Deletion | Chr7 | 9162660 | 9162660 | 1 | |
| Deletion | Chr2 | 11707813 | 11707814 | 2 | |
| Deletion | Chr9 | 12444319 | 12444337 | 19 | |
| Deletion | Chr12 | 14918055 | 14918055 | 1 | |
| Deletion | Chr7 | 15575486 | 15575487 | 2 | OsKitaake07g129500 |
| Deletion | Chr6 | 20204336 | 20204383 | 48 | |
| Deletion | Chr10 | 20274294 | 20274304 | 11 | |
| Deletion | Chr12 | 21600972 | 21600984 | 13 | |
| Deletion | Chr2 | 25057569 | 25057570 | 2 | |
| Deletion | Chr12 | 26559958 | 26559958 | 1 | |
| Deletion | Chr2 | 32586047 | 32586047 | 1 | |
| Deletion | Chr3 | 35328881 | 35328890 | 10 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 10209513 | 10209515 | 1 | |
| Insertion | Chr2 | 19827707 | 19827713 | 5 | |
| Insertion | Chr5 | 25146801 | 25146803 | 1 | |
| Insertion | Chr8 | 5230234 | 5230236 | 1 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 23904852 | Chr3 | 26346646 |