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Mutant Information

Mutant Name	FN4568-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4568-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5523229 C-A HET
SBS Chr1 7282608 C-T HOMO
SBS Chr1 7396612 A-T HET
SBS Chr1 11343776 A-G HOMO
SBS Chr1 33449295 A-T HOMO
SBS Chr2 3887143 G-A HET
SBS Chr2 34716794 T-C HET
SBS Chr3 11135451 C-A HET
SBS Chr4 567301 C-T HET
SBS Chr4 9099746 C-T HET
SBS Chr4 10726391 C-T HET
SBS Chr4 22390230 C-T HET
SBS Chr4 24916127 C-T HET
SBS Chr4 30570596 C-T HET
SBS Chr4 36842279 C-T HET
SBS Chr5 7997107 G-A HET
SBS Chr5 11823877 G-A HOMO
SBS Chr5 13749854 A-G HET
SBS Chr5 19175318 T-C HET
SBS Chr5 23349309 C-T HET
SBS Chr5 29302706 G-A HET OsKitaake05g278201
SBS Chr6 3803736 T-A HOMO
SBS Chr6 11072823 G-T HET
SBS Chr6 15300444 G-A HET
SBS Chr6 15474561 C-T HET
SBS Chr6 17146987 G-T HET
SBS Chr6 17525581 C-G HOMO
SBS Chr7 1890857 A-T HET
SBS Chr7 7468559 G-A HET
SBS Chr7 11125089 G-A HOMO
SBS Chr7 24827671 G-A HET
SBS Chr7 27845139 G-T HET
SBS Chr8 1369799 A-T HOMO
SBS Chr8 7732889 A-C HOMO
SBS Chr8 17273612 G-A HOMO
SBS Chr8 18043411 T-C HOMO
SBS Chr8 26777474 G-A HET
SBS Chr9 19307931 G-A HET
SBS Chr10 6886658 G-A HET
SBS Chr10 8832782 C-T HET
SBS Chr10 12676948 T-A HOMO
SBS Chr10 12907366 C-T HET
SBS Chr10 14900192 A-T HOMO
SBS Chr11 12659597 G-T HET
SBS Chr12 14259479 G-T HET
SBS Chr12 22454231 G-A HET

Deletions: 35

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1023425 1023425 1
Deletion Chr7 1444001 1653000 209000 24
Deletion Chr7 3704466 3704467 2
Deletion Chr7 3712592 3712606 15 OsKitaake07g047800
Deletion Chr4 4414335 4414340 6
Deletion Chr12 4608065 4608073 9
Deletion Chr9 5674489 5674489 1
Deletion Chr1 5722667 5722667 1
Deletion Chr11 6727419 6727421 3
Deletion Chr7 6920576 6920587 12
Deletion Chr7 6933789 6933797 9
Deletion Chr7 8066852 8066855 4
Deletion Chr1 10766761 10766763 3
Deletion Chr1 11646799 11646800 2
Deletion Chr3 12237001 12290000 53000 6
Deletion Chr3 13040275 13040275 1
Deletion Chr6 13490142 13490142 1
Deletion Chr7 15678335 15678336 2
Deletion Chr9 16365572 16365572 1
Deletion Chr12 16831013 16831013 1
Deletion Chr11 17245421 17245421 1
Deletion Chr7 17746265 17746266 2
Deletion Chr2 18926899 18926900 2
Deletion Chr11 19560918 19560918 1
Deletion Chr7 20101638 20101639 2
Deletion Chr10 21544001 21554000 10000 OsKitaake10g171600
Deletion Chr10 21599952 21599956 5
Deletion Chr10 23343708 23343709 2
Deletion Chr1 23632388 23632389 2
Deletion Chr3 24662620 24662621 2
Deletion Chr3 25407608 25407616 9
Deletion Chr4 29230385 29230389 5
Deletion Chr3 33248914 33248914 1
Deletion Chr3 34238001 34254000 16000 2
Deletion Chr1 38072303 38072308 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 11998229 11998231 1
Insertion Chr6 21527030 21527032 1
Insertion Chr7 10049396 10049399 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 18816318 18816647
Inversion Chr7 21071887 21072047

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 7043534 Chr1 40648915 OsKitaake01g441900
Translocation Chr7 7044125 Chr1 40648911 2
Translocation Chr12 11725446 Chr2 26549613
Translocation Chr12 11725634 Chr2 26549610
Translocation Chr10 21543829 Chr1 2917665 OsKitaake10g171600
Translocation Chr10 21553968 Chr1 2854270
Translocation Chr10 21565232 Chr1 2854268
Translocation Chr10 21565359 Chr1 2917693
Translocation Chr6 25397907 Chr3 36750703
Translocation Chr6 25397913 Chr3 36744827

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5523229	C-A	HET
SBS	Chr1	7282608	C-T	HOMO
SBS	Chr1	7396612	A-T	HET
SBS	Chr1	11343776	A-G	HOMO
SBS	Chr1	33449295	A-T	HOMO
SBS	Chr2	3887143	G-A	HET
SBS	Chr2	34716794	T-C	HET
SBS	Chr3	11135451	C-A	HET
SBS	Chr4	567301	C-T	HET
SBS	Chr4	9099746	C-T	HET
SBS	Chr4	10726391	C-T	HET
SBS	Chr4	22390230	C-T	HET
SBS	Chr4	24916127	C-T	HET
SBS	Chr4	30570596	C-T	HET
SBS	Chr4	36842279	C-T	HET
SBS	Chr5	7997107	G-A	HET
SBS	Chr5	11823877	G-A	HOMO
SBS	Chr5	13749854	A-G	HET
SBS	Chr5	19175318	T-C	HET
SBS	Chr5	23349309	C-T	HET
SBS	Chr5	29302706	G-A	HET		OsKitaake05g278201
SBS	Chr6	3803736	T-A	HOMO
SBS	Chr6	11072823	G-T	HET
SBS	Chr6	15300444	G-A	HET
SBS	Chr6	15474561	C-T	HET
SBS	Chr6	17146987	G-T	HET
SBS	Chr6	17525581	C-G	HOMO
SBS	Chr7	1890857	A-T	HET
SBS	Chr7	7468559	G-A	HET
SBS	Chr7	11125089	G-A	HOMO
SBS	Chr7	24827671	G-A	HET
SBS	Chr7	27845139	G-T	HET
SBS	Chr8	1369799	A-T	HOMO
SBS	Chr8	7732889	A-C	HOMO
SBS	Chr8	17273612	G-A	HOMO
SBS	Chr8	18043411	T-C	HOMO
SBS	Chr8	26777474	G-A	HET
SBS	Chr9	19307931	G-A	HET
SBS	Chr10	6886658	G-A	HET
SBS	Chr10	8832782	C-T	HET
SBS	Chr10	12676948	T-A	HOMO
SBS	Chr10	12907366	C-T	HET
SBS	Chr10	14900192	A-T	HOMO
SBS	Chr11	12659597	G-T	HET
SBS	Chr12	14259479	G-T	HET
SBS	Chr12	22454231	G-A	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1023425	1023425	1
Deletion	Chr7	1444001	1653000	209000	24
Deletion	Chr7	3704466	3704467	2
Deletion	Chr7	3712592	3712606	15	OsKitaake07g047800
Deletion	Chr4	4414335	4414340	6
Deletion	Chr12	4608065	4608073	9
Deletion	Chr9	5674489	5674489	1
Deletion	Chr1	5722667	5722667	1
Deletion	Chr11	6727419	6727421	3
Deletion	Chr7	6920576	6920587	12
Deletion	Chr7	6933789	6933797	9
Deletion	Chr7	8066852	8066855	4
Deletion	Chr1	10766761	10766763	3
Deletion	Chr1	11646799	11646800	2
Deletion	Chr3	12237001	12290000	53000	6
Deletion	Chr3	13040275	13040275	1
Deletion	Chr6	13490142	13490142	1
Deletion	Chr7	15678335	15678336	2
Deletion	Chr9	16365572	16365572	1
Deletion	Chr12	16831013	16831013	1
Deletion	Chr11	17245421	17245421	1
Deletion	Chr7	17746265	17746266	2
Deletion	Chr2	18926899	18926900	2
Deletion	Chr11	19560918	19560918	1
Deletion	Chr7	20101638	20101639	2
Deletion	Chr10	21544001	21554000	10000	OsKitaake10g171600
Deletion	Chr10	21599952	21599956	5
Deletion	Chr10	23343708	23343709	2
Deletion	Chr1	23632388	23632389	2
Deletion	Chr3	24662620	24662621	2
Deletion	Chr3	25407608	25407616	9
Deletion	Chr4	29230385	29230389	5
Deletion	Chr3	33248914	33248914	1
Deletion	Chr3	34238001	34254000	16000	2
Deletion	Chr1	38072303	38072308	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	18816318	18816647
Inversion	Chr7	21071887	21072047

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes