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| Mutant Information |
|---|
| Mutant Name | FN457-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN457-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3994610 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 6061132 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 17252740 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 17984897 | T-A | Homo | INTRON | |
| SBS | Chr1 | 37192339 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37236766 | C-A | Hetero | STOP_GAINED | OsKitaake01g397300 |
| SBS | Chr1 | 39756736 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 27080248 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18445095 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 22432408 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4620817 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 6396871 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 19583962 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 1047079 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 7196301 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 6170386 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g080900 |
| SBS | Chr6 | 13213944 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 14542692 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 25198993 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 3852569 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 27615367 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 19882482 | T-A | Homo | INTRON | |
| SBS | Chr9 | 20253123 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 20649540 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 7411918 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 10804561 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 2444842 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15358749 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19361427 | G-A | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 682899 | 682901 | 2 | |
| Deletion | Chr1 | 1447025 | 1447027 | 2 | |
| Deletion | Chr6 | 1526059 | 1526075 | 16 | |
| Deletion | Chr12 | 3809743 | 3809744 | 1 | |
| Deletion | Chr4 | 4626819 | 4626820 | 1 | |
| Deletion | Chr1 | 4712001 | 4712004 | 3 | |
| Deletion | Chr5 | 6837891 | 6837898 | 7 | OsKitaake05g068800 |
| Deletion | Chr6 | 7160001 | 7202000 | 41999 | 9 |
| Deletion | Chr6 | 8313601 | 8313603 | 2 | |
| Deletion | Chr3 | 9335391 | 9335397 | 6 | |
| Deletion | Chr11 | 10669189 | 10669197 | 8 | |
| Deletion | Chr2 | 16020515 | 16020516 | 1 | |
| Deletion | Chr12 | 21449634 | 21449640 | 6 | |
| Deletion | Chr4 | 21984215 | 21984216 | 1 | OsKitaake04g127800 |
| Deletion | Chr9 | 22388899 | 22388903 | 4 | |
| Deletion | Chr11 | 23713641 | 23713642 | 1 | |
| Deletion | Chr2 | 30831393 | 30831394 | 1 | |
| Deletion | Chr3 | 31326615 | 31326619 | 4 | |
| Deletion | Chr2 | 34094929 | 34094935 | 6 | OsKitaake02g354200 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 39650000 | 39650003 | 2 | |
| Insertion | Chr9 | 619674 | 619677 | 2 | |
| Insertion | Chr11 | 15002266 | 15002268 | 1 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 1208515 | Chr1 | 3513905 | 2 |
| Translocation | Chr2 | 1239041 | Chr1 | 3513900 | 2 |
| Translocation | Chr7 | 9648089 | Chr6 | 7159503 | OsKitaake06g092201 |