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| Mutant Information |
|---|
| Mutant Name | FN4570-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4570-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3923931 | C-T | HET | ||
| SBS | Chr1 | 7210753 | G-A | HET | ||
| SBS | Chr1 | 13722537 | T-G | HET | ||
| SBS | Chr1 | 16575755 | T-C | HET | ||
| SBS | Chr1 | 18536004 | C-T | HET | ||
| SBS | Chr1 | 23539828 | T-A | HET | ||
| SBS | Chr1 | 26086710 | C-T | HOMO | ||
| SBS | Chr1 | 28442650 | C-G | HET | ||
| SBS | Chr1 | 38458685 | G-T | HET | ||
| SBS | Chr1 | 38614530 | A-T | HET | ||
| SBS | Chr2 | 3989245 | G-A | HOMO | ||
| SBS | Chr3 | 22251889 | T-C | HET | ||
| SBS | Chr3 | 29120665 | A-T | HET | ||
| SBS | Chr4 | 13893908 | G-A | HOMO | ||
| SBS | Chr4 | 13901688 | G-A | HOMO | ||
| SBS | Chr4 | 26930023 | G-T | HET | ||
| SBS | Chr4 | 32384835 | C-A | HET | ||
| SBS | Chr5 | 11545850 | G-T | HET | OsKitaake05g095600 | |
| SBS | Chr7 | 929844 | A-T | HET | OsKitaake07g011900 | |
| SBS | Chr7 | 3396855 | G-A | HOMO | ||
| SBS | Chr7 | 5106747 | G-C | HET | ||
| SBS | Chr7 | 12717433 | G-C | HET | ||
| SBS | Chr7 | 12959904 | C-T | HET | ||
| SBS | Chr8 | 9202493 | G-A | HET | ||
| SBS | Chr8 | 11902167 | G-A | HET | ||
| SBS | Chr8 | 12292415 | C-T | HET | ||
| SBS | Chr9 | 12570488 | T-G | HET | ||
| SBS | Chr9 | 12570492 | G-C | HET | ||
| SBS | Chr10 | 3708777 | A-G | HET | ||
| SBS | Chr10 | 3708778 | G-A | HET | ||
| SBS | Chr10 | 5183745 | G-A | HET | ||
| SBS | Chr10 | 13973115 | G-T | HOMO | ||
| SBS | Chr11 | 8908152 | T-C | HET |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1621157 | 1621159 | 3 | OsKitaake07g022000 |
| Deletion | Chr8 | 1879209 | 1879214 | 6 | |
| Deletion | Chr5 | 2100627 | 2100629 | 3 | |
| Deletion | Chr10 | 2878353 | 2878354 | 2 | |
| Deletion | Chr3 | 4040954 | 4040961 | 8 | |
| Deletion | Chr9 | 6506001 | 6640000 | 134000 | 9 |
| Deletion | Chr1 | 7283300 | 7283302 | 3 | |
| Deletion | Chr4 | 11380951 | 11380961 | 11 | |
| Deletion | Chr3 | 12176673 | 12176673 | 1 | |
| Deletion | Chr1 | 15818902 | 15818906 | 5 | |
| Deletion | Chr1 | 16402658 | 16402658 | 1 | |
| Deletion | Chr10 | 16943724 | 16943725 | 2 | |
| Deletion | Chr2 | 19595234 | 19595234 | 1 | |
| Deletion | Chr3 | 33500522 | 33500529 | 8 | |
| Deletion | Chr3 | 35988001 | 36042000 | 54000 | 10 |
Insertions: 7
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 5371938 | 5376081 | |
| Inversion | Chr11 | 5371958 | 5376084 | |
| Inversion | Chr1 | 27664747 | 28010667 | OsKitaake01g272400 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 828532 | Chr1 | 28004749 | OsKitaake01g272200 |
| Translocation | Chr8 | 17233374 | Chr3 | 10964714 | |
| Translocation | Chr4 | 21396315 | Chr1 | 10578016 | |
| Translocation | Chr12 | 24590771 | Chr3 | 8477884 | OsKitaake12g199200 |
| Translocation | Chr12 | 24590773 | Chr3 | 8479692 | 2 |