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| Mutant Information |
|---|
| Mutant Name | FN4574-2-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4574-2-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 52
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5342967 | A-T | HET | ||
| SBS | Chr1 | 6091964 | G-A | HET | ||
| SBS | Chr1 | 13245930 | C-G | HET | ||
| SBS | Chr1 | 20393984 | T-C | HET | ||
| SBS | Chr2 | 16770761 | G-A | HET | ||
| SBS | Chr2 | 21123889 | C-T | HOMO | OsKitaake02g203600 | |
| SBS | Chr2 | 21877703 | T-C | HET | ||
| SBS | Chr2 | 23359048 | G-T | HET | OsKitaake02g228500 | |
| SBS | Chr2 | 28255013 | G-C | HOMO | ||
| SBS | Chr2 | 31512407 | G-C | HET | ||
| SBS | Chr3 | 10705714 | G-T | HET | ||
| SBS | Chr3 | 14208330 | T-C | HOMO | ||
| SBS | Chr3 | 17729658 | C-T | HET | ||
| SBS | Chr4 | 1791665 | T-C | HET | ||
| SBS | Chr4 | 12558444 | A-G | HET | ||
| SBS | Chr4 | 22773056 | A-T | HOMO | ||
| SBS | Chr4 | 22791796 | G-A | HOMO | ||
| SBS | Chr4 | 32406810 | G-T | HET | ||
| SBS | Chr4 | 35750479 | C-A | HET | ||
| SBS | Chr5 | 7623994 | C-T | HET | ||
| SBS | Chr5 | 9025077 | C-T | HET | ||
| SBS | Chr5 | 9739673 | G-C | HET | ||
| SBS | Chr5 | 15903429 | T-C | HET | ||
| SBS | Chr6 | 16828674 | G-T | HET | ||
| SBS | Chr7 | 830555 | G-A | HET | ||
| SBS | Chr7 | 4950953 | A-G | HET | ||
| SBS | Chr7 | 5975056 | C-A | HET | ||
| SBS | Chr7 | 10423185 | T-C | HET | ||
| SBS | Chr7 | 11602841 | G-A | HET | ||
| SBS | Chr7 | 22489404 | T-A | HOMO | ||
| SBS | Chr8 | 975082 | A-C | HET | ||
| SBS | Chr8 | 3820786 | A-T | HET | ||
| SBS | Chr8 | 6571365 | G-T | HOMO | ||
| SBS | Chr8 | 15637560 | G-A | HET | ||
| SBS | Chr8 | 18284934 | G-A | HET | ||
| SBS | Chr9 | 10593078 | A-T | HET | ||
| SBS | Chr9 | 13766017 | G-A | HET | ||
| SBS | Chr9 | 13796130 | T-C | HET | ||
| SBS | Chr9 | 15173870 | C-G | HET | ||
| SBS | Chr9 | 15364602 | T-A | HET | ||
| SBS | Chr10 | 6694217 | T-A | HET | ||
| SBS | Chr10 | 22743180 | C-T | HOMO | ||
| SBS | Chr11 | 5557929 | C-T | HET | ||
| SBS | Chr11 | 7404286 | C-T | HET | ||
| SBS | Chr11 | 7606977 | C-A | HET | ||
| SBS | Chr11 | 14907943 | G-A | HET | ||
| SBS | Chr11 | 16592047 | G-A | HET | ||
| SBS | Chr11 | 21095637 | T-A | HOMO | ||
| SBS | Chr11 | 21981575 | A-G | HET | ||
| SBS | Chr11 | 26042274 | C-T | HOMO | ||
| SBS | Chr12 | 233814 | C-T | HET | ||
| SBS | Chr12 | 644435 | T-G | HET |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 639135 | 639136 | 2 | 2 |
| Deletion | Chr1 | 1025408 | 1025409 | 2 | |
| Deletion | Chr1 | 2632442 | 2632443 | 2 | |
| Deletion | Chr12 | 2873932 | 2873933 | 2 | |
| Deletion | Chr3 | 4100690 | 4100696 | 7 | OsKitaake03g058100 |
| Deletion | Chr5 | 5852679 | 5852679 | 1 | |
| Deletion | Chr3 | 6454211 | 6454215 | 5 | |
| Deletion | Chr10 | 7165001 | 7443000 | 278000 | 15 |
| Deletion | Chr12 | 7384374 | 7384376 | 3 | |
| Deletion | Chr4 | 9932727 | 9932728 | 2 | |
| Deletion | Chr8 | 12314210 | 12314211 | 2 | |
| Deletion | Chr8 | 13461863 | 13461865 | 3 | |
| Deletion | Chr11 | 15642782 | 15642783 | 2 | |
| Deletion | Chr4 | 17984033 | 17984034 | 2 | |
| Deletion | Chr2 | 18402626 | 18402627 | 2 | |
| Deletion | Chr10 | 22471228 | 22471228 | 1 | |
| Deletion | Chr11 | 23780659 | 23780659 | 1 |
Insertions: 8
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 11403269 | 11403422 | |
| Inversion | Chr8 | 17833721 | 18202396 | OsKitaake08g133200 |
| Inversion | Chr4 | 19798611 | 19798751 | |
| Inversion | Chr12 | 21427904 | 21479073 | |
| Inversion | Chr12 | 21436783 | 21479081 |