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| Mutant Information |
|---|
| Mutant Name | FN4576-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4576-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23157441 | C-T | HOMO | ||
| SBS | Chr1 | 23157442 | G-T | HOMO | ||
| SBS | Chr1 | 24117181 | G-A | HET | ||
| SBS | Chr1 | 35124838 | G-T | HET | ||
| SBS | Chr2 | 7648020 | A-G | HET | ||
| SBS | Chr3 | 5778552 | C-A | HET | ||
| SBS | Chr3 | 7104588 | T-A | HET | ||
| SBS | Chr3 | 9277241 | G-A | HET | ||
| SBS | Chr3 | 9474889 | C-T | HET | ||
| SBS | Chr3 | 21066994 | G-A | HET | ||
| SBS | Chr3 | 27630185 | G-A | HOMO | ||
| SBS | Chr3 | 28730622 | A-C | HET | ||
| SBS | Chr5 | 19926968 | A-T | HET | ||
| SBS | Chr6 | 8294427 | C-A | HET | ||
| SBS | Chr7 | 12529778 | C-T | HET | OsKitaake07g111800 | |
| SBS | Chr7 | 27509538 | G-T | HET | ||
| SBS | Chr8 | 17953261 | A-G | HET | ||
| SBS | Chr8 | 18643172 | T-C | HET | ||
| SBS | Chr9 | 663868 | G-A | HET | ||
| SBS | Chr9 | 15657567 | A-G | HET | ||
| SBS | Chr9 | 18436932 | T-C | HET | ||
| SBS | Chr10 | 1270597 | A-C | HET | ||
| SBS | Chr10 | 9519748 | G-A | HET | ||
| SBS | Chr10 | 11196465 | G-A | HET | ||
| SBS | Chr10 | 15365533 | C-T | HET | ||
| SBS | Chr10 | 22622161 | C-T | HET | ||
| SBS | Chr11 | 21745430 | T-C | HET | ||
| SBS | Chr12 | 15964870 | G-A | HET |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 725083 | 725084 | 2 | |
| Deletion | Chr11 | 8647302 | 8647303 | 2 | |
| Deletion | Chr1 | 8869920 | 8869929 | 10 | |
| Deletion | Chr2 | 11231440 | 11231440 | 1 | |
| Deletion | Chr11 | 17620896 | 17620897 | 2 | |
| Deletion | Chr9 | 19353400 | 19353414 | 15 | OsKitaake09g157100 |
| Deletion | Chr3 | 29011601 | 29011601 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 17045109 | 17045112 | 2 | |
| Insertion | Chr11 | 2678059 | 2678062 | 2 | |
| Insertion | Chr11 | 19465609 | 19465612 | 2 | |
| Insertion | Chr6 | 12846850 | 12846852 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 6450874 | 6451135 | |
| Inversion | Chr9 | 12197722 | 12197946 |