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| Mutant Information |
|---|
| Mutant Name | FN4577-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4577-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 41
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 714244 | G-C | HET | ||
| SBS | Chr1 | 5322721 | C-T | HET | ||
| SBS | Chr1 | 7777579 | C-T | HOMO | ||
| SBS | Chr1 | 31174046 | G-A | HET | ||
| SBS | Chr1 | 41671314 | G-A | HOMO | ||
| SBS | Chr1 | 41838283 | A-T | HOMO | ||
| SBS | Chr2 | 10987275 | G-C | HOMO | ||
| SBS | Chr2 | 18425529 | G-A | HOMO | ||
| SBS | Chr2 | 27138028 | G-A | HOMO | OsKitaake02g271300 | |
| SBS | Chr2 | 35967490 | G-A | HOMO | ||
| SBS | Chr2 | 36744666 | G-A | HET | ||
| SBS | Chr3 | 6577706 | C-T | HET | ||
| SBS | Chr3 | 11189788 | C-T | HET | ||
| SBS | Chr3 | 12468613 | A-C | HOMO | ||
| SBS | Chr3 | 19582604 | A-T | HOMO | ||
| SBS | Chr4 | 3582078 | C-G | HOMO | ||
| SBS | Chr4 | 25016880 | A-T | HET | ||
| SBS | Chr6 | 14346741 | A-G | HOMO | ||
| SBS | Chr6 | 18845775 | C-T | HOMO | ||
| SBS | Chr6 | 19790396 | G-A | HOMO | ||
| SBS | Chr7 | 7756952 | C-T | HOMO | ||
| SBS | Chr7 | 9213823 | C-A | HET | ||
| SBS | Chr7 | 23975111 | G-A | HET | ||
| SBS | Chr8 | 682601 | A-T | HET | ||
| SBS | Chr8 | 3920136 | G-A | HET | ||
| SBS | Chr8 | 7470297 | G-A | HET | ||
| SBS | Chr8 | 23466915 | C-T | HET | ||
| SBS | Chr8 | 25657373 | G-T | HET | ||
| SBS | Chr8 | 25657374 | A-T | HET | ||
| SBS | Chr8 | 26742542 | C-T | HET | ||
| SBS | Chr9 | 14159457 | G-A | HOMO | ||
| SBS | Chr9 | 14621615 | C-T | HOMO | OsKitaake09g099700 | |
| SBS | Chr10 | 817137 | C-T | HOMO | ||
| SBS | Chr10 | 2311041 | A-G | HET | ||
| SBS | Chr10 | 10092767 | G-A | HET | ||
| SBS | Chr10 | 15475834 | G-A | HOMO | ||
| SBS | Chr10 | 17411910 | C-T | HET | ||
| SBS | Chr11 | 22755403 | C-T | HET | OsKitaake11g180500 | |
| SBS | Chr12 | 2155802 | G-A | HET | ||
| SBS | Chr12 | 13065310 | C-T | HET | ||
| SBS | Chr12 | 25462999 | C-T | HET |
Deletions: 26
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 5229175 | 5229184 | 10 | |
| Deletion | Chr3 | 5298938 | 5298938 | 1 | |
| Deletion | Chr2 | 5587300 | 5587323 | 24 | |
| Deletion | Chr4 | 6378295 | 6378295 | 1 | |
| Deletion | Chr3 | 6821850 | 6821850 | 1 | |
| Deletion | Chr11 | 7534637 | 7534637 | 1 | |
| Deletion | Chr11 | 7591827 | 7591833 | 7 | OsKitaake11g085300 |
| Deletion | Chr6 | 7913209 | 7913217 | 9 | |
| Deletion | Chr2 | 10143976 | 10143977 | 2 | |
| Deletion | Chr6 | 10501898 | 10501916 | 19 | |
| Deletion | Chr9 | 12348238 | 12348251 | 14 | |
| Deletion | Chr1 | 14026465 | 14026466 | 2 | |
| Deletion | Chr9 | 14621630 | 14621633 | 4 | OsKitaake09g099700 |
| Deletion | Chr12 | 15704865 | 15704865 | 1 | |
| Deletion | Chr7 | 16716143 | 16716146 | 4 | |
| Deletion | Chr1 | 17244980 | 17244980 | 1 | |
| Deletion | Chr6 | 18845423 | 18845435 | 13 | |
| Deletion | Chr2 | 19108278 | 19108278 | 1 | OsKitaake02g186500 |
| Deletion | Chr3 | 19893189 | 19893189 | 1 | |
| Deletion | Chr12 | 22826970 | 22826971 | 2 | |
| Deletion | Chr12 | 23967520 | 23967523 | 4 | |
| Deletion | Chr2 | 24862832 | 24862832 | 1 | |
| Deletion | Chr6 | 25691867 | 25691880 | 14 | |
| Deletion | Chr1 | 37578444 | 37578446 | 3 | |
| Deletion | Chr1 | 38218949 | 38218960 | 12 | |
| Deletion | Chr1 | 38732056 | 38732056 | 1 |
Insertions: 7
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 24759183 | 25140608 | |
| Inversion | Chr12 | 24759191 | 25140601 | |
| Inversion | Chr4 | 30369094 | 30369499 | OsKitaake04g233700 |