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| Mutant Information |
|---|
| Mutant Name | FN4578-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4578-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17956975 | G-A | HOMO | ||
| SBS | Chr1 | 42935917 | C-T | HET | ||
| SBS | Chr2 | 768121 | A-G | HET | ||
| SBS | Chr2 | 13096713 | C-G | HET | ||
| SBS | Chr3 | 25954088 | T-C | HET | ||
| SBS | Chr3 | 28286635 | G-A | HET | ||
| SBS | Chr3 | 31036145 | G-C | HOMO | ||
| SBS | Chr3 | 31803006 | T-A | HOMO | ||
| SBS | Chr4 | 5247647 | G-A | HET | OsKitaake04g025600 | |
| SBS | Chr4 | 17862900 | T-A | HET | ||
| SBS | Chr4 | 31936307 | T-A | HET | ||
| SBS | Chr4 | 32798885 | C-T | HET | ||
| SBS | Chr5 | 4761544 | G-A | HET | ||
| SBS | Chr5 | 30171732 | A-T | HET | ||
| SBS | Chr6 | 3395662 | T-A | HET | ||
| SBS | Chr6 | 3395663 | G-A | HET | ||
| SBS | Chr6 | 25423282 | C-T | HET | ||
| SBS | Chr6 | 25660310 | C-G | HET | ||
| SBS | Chr6 | 26791067 | T-A | HOMO | OsKitaake06g239800 | |
| SBS | Chr7 | 29505620 | C-T | HET | ||
| SBS | Chr8 | 11115975 | C-T | HET | ||
| SBS | Chr8 | 11980695 | C-A | HET | ||
| SBS | Chr8 | 19179638 | T-A | HOMO | ||
| SBS | Chr9 | 21070242 | T-A | HOMO | ||
| SBS | Chr10 | 3657711 | A-G | HOMO | OsKitaake10g027300 | |
| SBS | Chr11 | 6904974 | G-A | HET | ||
| SBS | Chr11 | 24593922 | C-T | HET |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 16270360 | 16270360 | 1 | |
| Deletion | Chr1 | 17257788 | 17257953 | 166 | |
| Deletion | Chr9 | 17974812 | 17974812 | 1 | OsKitaake09g137400 |
| Deletion | Chr5 | 18306185 | 18306185 | 1 | |
| Deletion | Chr2 | 21535034 | 21535034 | 1 | OsKitaake02g208200 |
| Deletion | Chr4 | 21660299 | 21660618 | 320 | |
| Deletion | Chr11 | 25253001 | 25368000 | 115000 | 13 |
Insertions: 8
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 15802336 | 16460778 | |
| Inversion | Chr6 | 15802357 | 16460781 | |
| Inversion | Chr2 | 18279992 | 18723138 | |
| Inversion | Chr2 | 18280007 | 18723153 | |
| Inversion | Chr2 | 37019017 | 37019169 | OsKitaake02g397300 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 2766513 | Chr7 | 27160279 | OsKitaake11g039000 |
| Translocation | Chr11 | 2786972 | Chr7 | 27160290 |