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Mutant Information

Mutant Name	FN4579-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4579-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 403981 G-A HET
SBS Chr1 23590063 T-C HET
SBS Chr2 5016620 C-T HOMO
SBS Chr2 16231149 C-T HET OsKitaake02g166900
SBS Chr2 22117254 C-T HET
SBS Chr3 16229371 C-T HET
SBS Chr3 21990348 G-T HET
SBS Chr3 24797800 T-C HET
SBS Chr3 35966038 A-T HOMO
SBS Chr4 6142894 C-A HOMO
SBS Chr5 1674035 T-A HET
SBS Chr5 3073485 T-C HET
SBS Chr5 4900484 T-A HET
SBS Chr5 28576500 T-G HOMO
SBS Chr7 6785588 T-C HOMO
SBS Chr7 10108756 A-G HOMO
SBS Chr7 13264366 C-T HOMO
SBS Chr7 17501496 G-T HOMO
SBS Chr7 22849068 G-A HOMO
SBS Chr8 13414044 A-T HET
SBS Chr8 13995283 G-A HOMO
SBS Chr9 6145537 G-A HET
SBS Chr9 9239763 T-A HET
SBS Chr9 11267979 T-A HOMO
SBS Chr10 476732 G-C HOMO
SBS Chr10 9776523 G-T HET
SBS Chr10 19808498 C-T HOMO
SBS Chr11 21125871 C-T HET
SBS Chr11 22892789 A-T HOMO OsKitaake11g181200
SBS Chr11 22932197 A-T HET
SBS Chr12 6508202 G-A HET
SBS Chr12 6508206 G-A HET
SBS Chr12 11368786 A-C HET
SBS Chr12 14349725 A-C HET
SBS Chr12 23971120 C-T HET

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1767313 1767315 3
Deletion Chr6 2074230 2074230 1
Deletion Chr8 3966564 3966565 2
Deletion Chr4 3971001 3971001 1
Deletion Chr6 4936866 4937080 215
Deletion Chr8 6001706 6001712 7
Deletion Chr7 6784673 6784685 13
Deletion Chr12 10062425 10062426 2
Deletion Chr3 11771299 11771316 18
Deletion Chr8 17208790 17208797 8
Deletion Chr1 20086519 20086521 3
Deletion Chr6 20258701 20258701 1
Deletion Chr10 22543073 22543081 9
Deletion Chr6 23116164 23116378 215
Deletion Chr8 25055253 25055254 2
Deletion Chr8 25327952 25327954 3 OsKitaake08g198200
Deletion Chr1 26360279 26360279 1 2
Deletion Chr6 29395355 29395356 2
Deletion Chr5 30215578 30215578 1
Deletion Chr3 34219833 34219842 10
Deletion Chr1 42250675 42250675 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16744382 16744384 1
Insertion Chr4 26297586 26297588 1
Insertion Chr8 8515960 8515962 1
Insertion Chr2 7738469 7738472 2
Insertion Chr3 1505717 1505719 1
Insertion Chr3 15587131 15587133 1

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2024834 2304639 2
Inversion Chr1 2247756 2284599
Inversion Chr1 2247769 2320245
Inversion Chr1 2304633 2320242 OsKitaake01g028400
Inversion Chr2 10804858 10805086
Inversion Chr1 14766176 14766455
Inversion Chr9 19005164 19005244 OsKitaake09g152100
Inversion Chr6 19183006 19901338
Inversion Chr6 19183016 19901343
Inversion Chr9 21681671 21681971 OsKitaake09g190700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17755400 Chr2 5974245 OsKitaake09g134600
Translocation Chr9 17755749 Chr2 5974253 OsKitaake09g134600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	403981	G-A	HET
SBS	Chr1	23590063	T-C	HET
SBS	Chr2	5016620	C-T	HOMO
SBS	Chr2	16231149	C-T	HET		OsKitaake02g166900
SBS	Chr2	22117254	C-T	HET
SBS	Chr3	16229371	C-T	HET
SBS	Chr3	21990348	G-T	HET
SBS	Chr3	24797800	T-C	HET
SBS	Chr3	35966038	A-T	HOMO
SBS	Chr4	6142894	C-A	HOMO
SBS	Chr5	1674035	T-A	HET
SBS	Chr5	3073485	T-C	HET
SBS	Chr5	4900484	T-A	HET
SBS	Chr5	28576500	T-G	HOMO
SBS	Chr7	6785588	T-C	HOMO
SBS	Chr7	10108756	A-G	HOMO
SBS	Chr7	13264366	C-T	HOMO
SBS	Chr7	17501496	G-T	HOMO
SBS	Chr7	22849068	G-A	HOMO
SBS	Chr8	13414044	A-T	HET
SBS	Chr8	13995283	G-A	HOMO
SBS	Chr9	6145537	G-A	HET
SBS	Chr9	9239763	T-A	HET
SBS	Chr9	11267979	T-A	HOMO
SBS	Chr10	476732	G-C	HOMO
SBS	Chr10	9776523	G-T	HET
SBS	Chr10	19808498	C-T	HOMO
SBS	Chr11	21125871	C-T	HET
SBS	Chr11	22892789	A-T	HOMO		OsKitaake11g181200
SBS	Chr11	22932197	A-T	HET
SBS	Chr12	6508202	G-A	HET
SBS	Chr12	6508206	G-A	HET
SBS	Chr12	11368786	A-C	HET
SBS	Chr12	14349725	A-C	HET
SBS	Chr12	23971120	C-T	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1767313	1767315	3
Deletion	Chr6	2074230	2074230	1
Deletion	Chr8	3966564	3966565	2
Deletion	Chr4	3971001	3971001	1
Deletion	Chr6	4936866	4937080	215
Deletion	Chr8	6001706	6001712	7
Deletion	Chr7	6784673	6784685	13
Deletion	Chr12	10062425	10062426	2
Deletion	Chr3	11771299	11771316	18
Deletion	Chr8	17208790	17208797	8
Deletion	Chr1	20086519	20086521	3
Deletion	Chr6	20258701	20258701	1
Deletion	Chr10	22543073	22543081	9
Deletion	Chr6	23116164	23116378	215
Deletion	Chr8	25055253	25055254	2
Deletion	Chr8	25327952	25327954	3	OsKitaake08g198200
Deletion	Chr1	26360279	26360279	1	2
Deletion	Chr6	29395355	29395356	2
Deletion	Chr5	30215578	30215578	1
Deletion	Chr3	34219833	34219842	10
Deletion	Chr1	42250675	42250675	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2024834	2304639	2
Inversion	Chr1	2247756	2284599
Inversion	Chr1	2247769	2320245
Inversion	Chr1	2304633	2320242	OsKitaake01g028400
Inversion	Chr2	10804858	10805086
Inversion	Chr1	14766176	14766455
Inversion	Chr9	19005164	19005244	OsKitaake09g152100
Inversion	Chr6	19183006	19901338
Inversion	Chr6	19183016	19901343
Inversion	Chr9	21681671	21681971	OsKitaake09g190700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes