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Mutant Information

Mutant Name	FN458-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN458-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17568375 T-C Hetero INTERGENIC
SBS Chr1 19391387 T-A Hetero INTERGENIC
SBS Chr1 20882687 C-T Hetero INTERGENIC
SBS Chr3 1072029 G-A Hetero INTERGENIC
SBS Chr3 10480398 C-G Homo NON_SYNONYMOUS_CODING OsKitaake03g143300
SBS Chr3 12514878 G-A Homo INTERGENIC
SBS Chr3 35654228 G-A Hetero INTRON
SBS Chr4 29819633 G-T Homo INTRON
SBS Chr5 5650910 C-G Hetero INTERGENIC
SBS Chr5 25164608 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g218800
SBS Chr6 7426606 T-G Hetero INTERGENIC
SBS Chr6 12113393 A-G Hetero INTERGENIC
SBS Chr7 25513321 G-T Hetero INTERGENIC
SBS Chr8 10820042 C-T Homo INTERGENIC
SBS Chr9 2683943 A-G Hetero INTRON
SBS Chr10 12081789 C-A Hetero INTERGENIC
SBS Chr11 14702732 T-A Hetero INTERGENIC
SBS Chr11 19427807 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 5135594 5135596 2
Deletion Chr12 9120657 9120659 2
Deletion Chr12 12822342 12822347 5
Deletion Chr9 17520026 17520028 2
Deletion Chr8 21552368 21552375 7
Deletion Chr5 22601001 22664000 62999 8
Deletion Chr8 23002995 23002996 1
Deletion Chr10 23097406 23097426 20
Deletion Chr5 29314832 29314834 2
Deletion Chr1 43196221 43196223 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 29944915 29944917 1
Insertion Chr7 28962925 28962930 4
Insertion Chr5 12402355 12402357 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 21337754 21873366

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 35790015 Chr1 31360731 OsKitaake03g394000
Translocation Chr3 35790193 Chr1 31360702 OsKitaake03g394000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17568375	T-C	Hetero	INTERGENIC
SBS	Chr1	19391387	T-A	Hetero	INTERGENIC
SBS	Chr1	20882687	C-T	Hetero	INTERGENIC
SBS	Chr3	1072029	G-A	Hetero	INTERGENIC
SBS	Chr3	10480398	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g143300
SBS	Chr3	12514878	G-A	Homo	INTERGENIC
SBS	Chr3	35654228	G-A	Hetero	INTRON
SBS	Chr4	29819633	G-T	Homo	INTRON
SBS	Chr5	5650910	C-G	Hetero	INTERGENIC
SBS	Chr5	25164608	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g218800
SBS	Chr6	7426606	T-G	Hetero	INTERGENIC
SBS	Chr6	12113393	A-G	Hetero	INTERGENIC
SBS	Chr7	25513321	G-T	Hetero	INTERGENIC
SBS	Chr8	10820042	C-T	Homo	INTERGENIC
SBS	Chr9	2683943	A-G	Hetero	INTRON
SBS	Chr10	12081789	C-A	Hetero	INTERGENIC
SBS	Chr11	14702732	T-A	Hetero	INTERGENIC
SBS	Chr11	19427807	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5135594	5135596	2
Deletion	Chr12	9120657	9120659	2
Deletion	Chr12	12822342	12822347	5
Deletion	Chr9	17520026	17520028	2
Deletion	Chr8	21552368	21552375	7
Deletion	Chr5	22601001	22664000	62999	8
Deletion	Chr8	23002995	23002996	1
Deletion	Chr10	23097406	23097426	20
Deletion	Chr5	29314832	29314834	2
Deletion	Chr1	43196221	43196223	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	21337754	21873366

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes