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| Mutant Information |
|---|
| Mutant Name | FN4584-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4584-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6450071 | C-T | HET | ||
| SBS | Chr1 | 8785319 | G-T | HET | ||
| SBS | Chr1 | 11326945 | G-C | HET | ||
| SBS | Chr1 | 26321561 | G-A | HOMO | ||
| SBS | Chr1 | 34910253 | G-A | HOMO | ||
| SBS | Chr1 | 34910254 | T-A | HOMO | ||
| SBS | Chr1 | 37336456 | T-C | HET | OsKitaake01g398401 | |
| SBS | Chr2 | 4476372 | C-T | HOMO | ||
| SBS | Chr2 | 10330826 | A-G | HET | ||
| SBS | Chr2 | 29718192 | C-T | HET | ||
| SBS | Chr3 | 2992801 | T-A | HET | ||
| SBS | Chr4 | 9659636 | G-C | HET | ||
| SBS | Chr4 | 12117441 | G-A | HET | ||
| SBS | Chr4 | 32729443 | C-T | HET | ||
| SBS | Chr4 | 33198350 | A-G | HET | ||
| SBS | Chr5 | 10216356 | A-T | HOMO | ||
| SBS | Chr5 | 14520841 | G-T | HET | ||
| SBS | Chr5 | 16644827 | T-A | HET | ||
| SBS | Chr5 | 21741498 | T-C | HOMO | ||
| SBS | Chr6 | 10171389 | C-T | HOMO | ||
| SBS | Chr6 | 11914113 | G-C | HET | ||
| SBS | Chr6 | 26423162 | G-A | HOMO | ||
| SBS | Chr7 | 7949635 | T-C | HOMO | ||
| SBS | Chr7 | 8907674 | T-C | HOMO | ||
| SBS | Chr7 | 17741486 | A-T | HOMO | ||
| SBS | Chr8 | 9768224 | A-G | HOMO | ||
| SBS | Chr9 | 3863995 | C-T | HET | ||
| SBS | Chr9 | 3864032 | C-A | HET | ||
| SBS | Chr9 | 13067394 | T-C | HOMO | ||
| SBS | Chr9 | 15735498 | T-A | HET | ||
| SBS | Chr10 | 13527876 | A-G | HET | ||
| SBS | Chr10 | 20320288 | C-T | HOMO | OsKitaake10g154700 | |
| SBS | Chr11 | 1427224 | G-T | HET | ||
| SBS | Chr11 | 5092415 | A-T | HET | ||
| SBS | Chr11 | 8542572 | C-T | HET | ||
| SBS | Chr12 | 12573467 | T-C | HET | ||
| SBS | Chr12 | 13927636 | G-A | HET | ||
| SBS | Chr12 | 23690983 | G-A | HET | ||
| SBS | Chr12 | 25919118 | C-T | HOMO | OsKitaake12g214200 |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1372611 | 1372611 | 1 | |
| Deletion | Chr8 | 2764019 | 2764019 | 1 | |
| Deletion | Chr8 | 8997008 | 8997027 | 20 | |
| Deletion | Chr6 | 15450001 | 15477000 | 27000 | OsKitaake06g152400 |
| Deletion | Chr10 | 18774889 | 18774890 | 2 | |
| Deletion | Chr7 | 19964716 | 19964716 | 1 | |
| Deletion | Chr4 | 20300908 | 20300908 | 1 | |
| Deletion | Chr3 | 21324781 | 21324782 | 2 | |
| Deletion | Chr6 | 22468039 | 22468039 | 1 | |
| Deletion | Chr11 | 23458001 | 23475000 | 17000 | 2 |
| Deletion | Chr5 | 30228273 | 30228273 | 1 | |
| Deletion | Chr5 | 30230033 | 30230033 | 1 |
Insertions: 9
Inversions: 5
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 8933479 | Chr2 | 17820497 | |
| Translocation | Chr5 | 8933923 | Chr2 | 17820492 | |
| Translocation | Chr8 | 26565698 | Chr7 | 9914807 |