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Mutant Information

Mutant Name	FN4586-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4586-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18737111 T-C HOMO
SBS Chr1 23015743 G-A HET
SBS Chr1 26681324 G-A HOMO
SBS Chr1 41562273 T-C HET
SBS Chr2 10548350 A-T HOMO
SBS Chr2 11303757 A-G HOMO
SBS Chr2 36521160 T-C HET
SBS Chr2 36720541 G-A HET
SBS Chr3 7297638 A-G HET
SBS Chr3 15604416 G-T HET
SBS Chr3 19072314 G-T HET
SBS Chr3 24417558 C-T HET
SBS Chr3 27068142 A-G HET
SBS Chr5 4257426 C-T HET
SBS Chr5 9182582 T-C HET
SBS Chr5 10904562 T-C HOMO
SBS Chr5 11900495 G-A HET
SBS Chr5 12280162 A-G HOMO
SBS Chr5 21264940 A-G HOMO OsKitaake05g171900
SBS Chr5 29005975 A-G HET
SBS Chr6 13022052 C-T HET
SBS Chr6 14949314 T-A HET
SBS Chr6 18307153 C-T HET
SBS Chr6 18744274 C-T HET
SBS Chr6 21240724 T-C HET
SBS Chr6 26280834 A-T HOMO
SBS Chr7 1090334 A-G HET
SBS Chr7 22829856 G-C HOMO
SBS Chr8 10118838 C-T HOMO
SBS Chr8 14128494 A-C HOMO
SBS Chr8 15656126 G-A HET
SBS Chr8 18972457 G-T HOMO
SBS Chr8 26458419 C-T HET
SBS Chr9 555520 G-A HET
SBS Chr9 19601190 C-T HET
SBS Chr9 21079594 C-T HET
SBS Chr10 2628438 G-A HET
SBS Chr10 7255108 C-T HET
SBS Chr11 18714272 C-T HET
SBS Chr12 311182 C-T HET
SBS Chr12 2213157 G-T HET
SBS Chr12 20700137 A-T HOMO OsKitaake12g161300
SBS Chr12 26909962 C-T HET

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 51817 51817 1
Deletion Chr2 322303 322303 1
Deletion Chr6 2209574 2209579 6
Deletion Chr3 2569426 2569426 1
Deletion Chr3 2979162 2979162 1
Deletion Chr12 3026817 3026828 12
Deletion Chr12 3313063 3313066 4 OsKitaake12g047100
Deletion Chr8 3354236 3354236 1
Deletion Chr10 3355344 3355344 1
Deletion Chr7 4513271 4513360 90
Deletion Chr2 6606856 6606861 6 OsKitaake02g089900
Deletion Chr7 7809730 7809730 1
Deletion Chr9 8377020 8377021 2
Deletion Chr3 9086397 9086398 2
Deletion Chr7 11789157 11789159 3
Deletion Chr7 12417588 12417590 3
Deletion Chr3 13701273 13701274 2
Deletion Chr7 14596283 14596283 1
Deletion Chr11 14623839 14623839 1
Deletion Chr8 14806923 14806934 12
Deletion Chr5 20384411 20384412 2
Deletion Chr5 20405149 20405150 2
Deletion Chr4 21712221 21712222 2
Deletion Chr11 26217001 26714000 497000 58
Deletion Chr11 26717001 26841000 124000 4
Deletion Chr5 28050878 28050886 9
Deletion Chr3 29306537 29306537 1
Deletion Chr1 34186488 34186488 1
Deletion Chr1 41679759 41679759 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 26077910 26077912 1
Insertion Chr2 27726462 27726464 1
Insertion Chr4 607122 607125 2
Insertion Chr6 1306703 1306705 1
Insertion Chr6 9223752 9223754 1
Insertion Chr8 5426114 5426116 1
Insertion Chr9 2062961 2062966 4

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 618434 1585712
Inversion Chr5 28683872 28912643 OsKitaake05g269400
Inversion Chr5 28683880 28912650

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 1585771 Chr3 20019409
Translocation Chr8 11174495 Chr3 22267335 OsKitaake03g242000
Translocation Chr8 11174621 Chr3 18577020 OsKitaake03g224800
Translocation Chr10 14827934 Chr5 12285808
Translocation Chr10 14837816 Chr5 12285814

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18737111	T-C	HOMO
SBS	Chr1	23015743	G-A	HET
SBS	Chr1	26681324	G-A	HOMO
SBS	Chr1	41562273	T-C	HET
SBS	Chr2	10548350	A-T	HOMO
SBS	Chr2	11303757	A-G	HOMO
SBS	Chr2	36521160	T-C	HET
SBS	Chr2	36720541	G-A	HET
SBS	Chr3	7297638	A-G	HET
SBS	Chr3	15604416	G-T	HET
SBS	Chr3	19072314	G-T	HET
SBS	Chr3	24417558	C-T	HET
SBS	Chr3	27068142	A-G	HET
SBS	Chr5	4257426	C-T	HET
SBS	Chr5	9182582	T-C	HET
SBS	Chr5	10904562	T-C	HOMO
SBS	Chr5	11900495	G-A	HET
SBS	Chr5	12280162	A-G	HOMO
SBS	Chr5	21264940	A-G	HOMO		OsKitaake05g171900
SBS	Chr5	29005975	A-G	HET
SBS	Chr6	13022052	C-T	HET
SBS	Chr6	14949314	T-A	HET
SBS	Chr6	18307153	C-T	HET
SBS	Chr6	18744274	C-T	HET
SBS	Chr6	21240724	T-C	HET
SBS	Chr6	26280834	A-T	HOMO
SBS	Chr7	1090334	A-G	HET
SBS	Chr7	22829856	G-C	HOMO
SBS	Chr8	10118838	C-T	HOMO
SBS	Chr8	14128494	A-C	HOMO
SBS	Chr8	15656126	G-A	HET
SBS	Chr8	18972457	G-T	HOMO
SBS	Chr8	26458419	C-T	HET
SBS	Chr9	555520	G-A	HET
SBS	Chr9	19601190	C-T	HET
SBS	Chr9	21079594	C-T	HET
SBS	Chr10	2628438	G-A	HET
SBS	Chr10	7255108	C-T	HET
SBS	Chr11	18714272	C-T	HET
SBS	Chr12	311182	C-T	HET
SBS	Chr12	2213157	G-T	HET
SBS	Chr12	20700137	A-T	HOMO		OsKitaake12g161300
SBS	Chr12	26909962	C-T	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	51817	51817	1
Deletion	Chr2	322303	322303	1
Deletion	Chr6	2209574	2209579	6
Deletion	Chr3	2569426	2569426	1
Deletion	Chr3	2979162	2979162	1
Deletion	Chr12	3026817	3026828	12
Deletion	Chr12	3313063	3313066	4	OsKitaake12g047100
Deletion	Chr8	3354236	3354236	1
Deletion	Chr10	3355344	3355344	1
Deletion	Chr7	4513271	4513360	90
Deletion	Chr2	6606856	6606861	6	OsKitaake02g089900
Deletion	Chr7	7809730	7809730	1
Deletion	Chr9	8377020	8377021	2
Deletion	Chr3	9086397	9086398	2
Deletion	Chr7	11789157	11789159	3
Deletion	Chr7	12417588	12417590	3
Deletion	Chr3	13701273	13701274	2
Deletion	Chr7	14596283	14596283	1
Deletion	Chr11	14623839	14623839	1
Deletion	Chr8	14806923	14806934	12
Deletion	Chr5	20384411	20384412	2
Deletion	Chr5	20405149	20405150	2
Deletion	Chr4	21712221	21712222	2
Deletion	Chr11	26217001	26714000	497000	58
Deletion	Chr11	26717001	26841000	124000	4
Deletion	Chr5	28050878	28050886	9
Deletion	Chr3	29306537	29306537	1
Deletion	Chr1	34186488	34186488	1
Deletion	Chr1	41679759	41679759	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	618434	1585712
Inversion	Chr5	28683872	28912643	OsKitaake05g269400
Inversion	Chr5	28683880	28912650

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes