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Mutant Information

Mutant Name	FN459-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN459-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14746953 T-C Hetero INTERGENIC
SBS Chr1 20057646 A-G Hetero INTERGENIC
SBS Chr1 24812539 T-A Hetero INTRON
SBS Chr1 29622383 C-T Hetero INTERGENIC
SBS Chr1 36974558 T-C Hetero INTRON
SBS Chr1 41191223 G-A Hetero INTRON
SBS Chr2 10379542 C-A Hetero INTERGENIC
SBS Chr2 18268600 A-T Hetero INTERGENIC
SBS Chr2 23419143 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g229366
SBS Chr2 26192456 T-A Hetero INTRON
SBS Chr2 33865665 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g350600
SBS Chr3 11113996 A-T Homo NON_SYNONYMOUS_CODING OsKitaake03g152500
SBS Chr3 11113999 G-C Homo NON_SYNONYMOUS_CODING OsKitaake03g152500
SBS Chr3 12394113 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g166700
SBS Chr3 22342399 C-A Hetero INTRON
SBS Chr3 26832420 T-C Hetero INTERGENIC
SBS Chr5 343880 A-G Homo INTERGENIC
SBS Chr5 3051756 A-T Homo INTRON
SBS Chr5 10130836 T-C Hetero INTERGENIC
SBS Chr5 10130838 G-T Hetero INTERGENIC
SBS Chr5 11443699 G-C Hetero INTERGENIC
SBS Chr5 23349309 C-T Homo INTERGENIC
SBS Chr6 14291652 C-A Hetero INTERGENIC
SBS Chr6 14907443 A-G Hetero INTERGENIC
SBS Chr6 17310157 G-A Hetero INTERGENIC
SBS Chr7 5408174 C-G Homo NON_SYNONYMOUS_CODING OsKitaake07g065900
SBS Chr7 13097008 G-A Homo INTERGENIC
SBS Chr8 6632732 G-A Homo INTERGENIC
SBS Chr8 7799009 A-T Homo INTERGENIC
SBS Chr8 14700696 G-A Homo INTERGENIC
SBS Chr8 18856713 G-A Hetero INTERGENIC
SBS Chr8 22605457 T-C Homo UTR_3_PRIME
SBS Chr11 23273200 C-T Hetero INTERGENIC
SBS Chr11 24550249 A-G Homo INTERGENIC
SBS Chr12 6682701 T-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4237424 4237426 2
Deletion Chr5 6736107 6736108 1
Deletion Chr7 7320866 7320880 14
Deletion Chr2 7546718 7546721 3
Deletion Chr7 9635412 9635417 5
Deletion Chr7 12233971 12233980 9
Deletion Chr3 12254879 12254882 3
Deletion Chr7 12442061 12442062 1
Deletion Chr11 17251851 17251854 3
Deletion Chr7 17674834 17674835 1
Deletion Chr3 21971915 21971920 5
Deletion Chr11 24342192 24342230 38

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 5419247 5419251 3
Insertion Chr7 24265846 24265849 2
Insertion Chr1 12807083 12807086 2
Insertion Chr1 14631562 14631614 51
Insertion Chr3 22492942 22492944 1

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7562142 8184298
Inversion Chr12 7562145 8184309
Inversion Chr1 14651417 14869736
Inversion Chr1 14651426 14869736
Inversion Chr12 20401157 20422130
Inversion Chr12 20401169 20422134
Inversion Chr3 36702232 37235506 OsKitaake03g408600
Inversion Chr3 36702236 37235512 OsKitaake03g408600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14746953	T-C	Hetero	INTERGENIC
SBS	Chr1	20057646	A-G	Hetero	INTERGENIC
SBS	Chr1	24812539	T-A	Hetero	INTRON
SBS	Chr1	29622383	C-T	Hetero	INTERGENIC
SBS	Chr1	36974558	T-C	Hetero	INTRON
SBS	Chr1	41191223	G-A	Hetero	INTRON
SBS	Chr2	10379542	C-A	Hetero	INTERGENIC
SBS	Chr2	18268600	A-T	Hetero	INTERGENIC
SBS	Chr2	23419143	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g229366
SBS	Chr2	26192456	T-A	Hetero	INTRON
SBS	Chr2	33865665	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g350600
SBS	Chr3	11113996	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g152500
SBS	Chr3	11113999	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g152500
SBS	Chr3	12394113	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g166700
SBS	Chr3	22342399	C-A	Hetero	INTRON
SBS	Chr3	26832420	T-C	Hetero	INTERGENIC
SBS	Chr5	343880	A-G	Homo	INTERGENIC
SBS	Chr5	3051756	A-T	Homo	INTRON
SBS	Chr5	10130836	T-C	Hetero	INTERGENIC
SBS	Chr5	10130838	G-T	Hetero	INTERGENIC
SBS	Chr5	11443699	G-C	Hetero	INTERGENIC
SBS	Chr5	23349309	C-T	Homo	INTERGENIC
SBS	Chr6	14291652	C-A	Hetero	INTERGENIC
SBS	Chr6	14907443	A-G	Hetero	INTERGENIC
SBS	Chr6	17310157	G-A	Hetero	INTERGENIC
SBS	Chr7	5408174	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g065900
SBS	Chr7	13097008	G-A	Homo	INTERGENIC
SBS	Chr8	6632732	G-A	Homo	INTERGENIC
SBS	Chr8	7799009	A-T	Homo	INTERGENIC
SBS	Chr8	14700696	G-A	Homo	INTERGENIC
SBS	Chr8	18856713	G-A	Hetero	INTERGENIC
SBS	Chr8	22605457	T-C	Homo	UTR_3_PRIME
SBS	Chr11	23273200	C-T	Hetero	INTERGENIC
SBS	Chr11	24550249	A-G	Homo	INTERGENIC
SBS	Chr12	6682701	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4237424	4237426	2
Deletion	Chr5	6736107	6736108	1
Deletion	Chr7	7320866	7320880	14
Deletion	Chr2	7546718	7546721	3
Deletion	Chr7	9635412	9635417	5
Deletion	Chr7	12233971	12233980	9
Deletion	Chr3	12254879	12254882	3
Deletion	Chr7	12442061	12442062	1
Deletion	Chr11	17251851	17251854	3
Deletion	Chr7	17674834	17674835	1
Deletion	Chr3	21971915	21971920	5
Deletion	Chr11	24342192	24342230	38

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7562142	8184298
Inversion	Chr12	7562145	8184309
Inversion	Chr1	14651417	14869736
Inversion	Chr1	14651426	14869736
Inversion	Chr12	20401157	20422130
Inversion	Chr12	20401169	20422134
Inversion	Chr3	36702232	37235506	OsKitaake03g408600
Inversion	Chr3	36702236	37235512	OsKitaake03g408600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes