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| Mutant Information |
|---|
| Mutant Name | FN4594-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4594-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29837979 | G-A | HOMO | ||
| SBS | Chr1 | 34283357 | G-A | HET | ||
| SBS | Chr1 | 36781253 | T-C | HET | OsKitaake01g391100 | |
| SBS | Chr1 | 36781254 | G-T | HET | OsKitaake01g391100 | |
| SBS | Chr3 | 3370435 | C-A | HET | OsKitaake03g047700 | |
| SBS | Chr4 | 1993625 | G-C | HET | ||
| SBS | Chr5 | 3191508 | T-A | HET | ||
| SBS | Chr5 | 13431587 | G-C | HET | ||
| SBS | Chr5 | 25805948 | A-T | HET | ||
| SBS | Chr6 | 27447762 | G-A | HOMO | ||
| SBS | Chr7 | 2714490 | G-C | HET | ||
| SBS | Chr7 | 4875224 | A-T | HET | ||
| SBS | Chr8 | 17535455 | C-T | HET | ||
| SBS | Chr8 | 21640343 | C-T | HET | ||
| SBS | Chr8 | 23711898 | T-C | HET | ||
| SBS | Chr9 | 9729322 | G-A | HET | ||
| SBS | Chr9 | 14880308 | C-T | HET | ||
| SBS | Chr10 | 11827740 | G-A | HOMO | ||
| SBS | Chr10 | 15638865 | G-A | HOMO | ||
| SBS | Chr11 | 8533219 | C-T | HET | ||
| SBS | Chr11 | 10503823 | A-G | HET | ||
| SBS | Chr11 | 23205036 | G-A | HET | ||
| SBS | Chr11 | 23205037 | G-A | HET | ||
| SBS | Chr12 | 9406055 | T-A | HOMO |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1445902 | 1445908 | 7 | |
| Deletion | Chr10 | 1517602 | 1517602 | 1 | |
| Deletion | Chr7 | 2603616 | 2603616 | 1 | |
| Deletion | Chr7 | 4273321 | 4273327 | 7 | |
| Deletion | Chr2 | 4987182 | 4987186 | 5 | |
| Deletion | Chr3 | 10683111 | 10683113 | 3 | |
| Deletion | Chr3 | 12007201 | 12007216 | 16 | OsKitaake03g163300 |
| Deletion | Chr9 | 12181096 | 12181096 | 1 | |
| Deletion | Chr3 | 16137001 | 16191000 | 54000 | 5 |
| Deletion | Chr4 | 18510970 | 18510971 | 2 | |
| Deletion | Chr12 | 20247290 | 20247291 | 2 | |
| Deletion | Chr1 | 26738053 | 26738053 | 1 | |
| Deletion | Chr8 | 28881071 | 28881071 | 1 | |
| Deletion | Chr4 | 31327319 | 31327323 | 5 | OsKitaake04g245400 |
| Deletion | Chr4 | 31925272 | 31925276 | 5 | |
| Deletion | Chr3 | 37633280 | 37633280 | 1 | |
| Deletion | Chr1 | 38838869 | 38838870 | 2 |
Insertions: 6
Inversions: 10
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 772989 | 895947 | OsKitaake12g010800 |
| Inversion | Chr8 | 916716 | 916906 | OsKitaake08g012200 |
| Inversion | Chr6 | 3223208 | 3223350 | |
| Inversion | Chr10 | 11831005 | 11831108 | |
| Inversion | Chr8 | 25282846 | 25431311 | |
| Inversion | Chr4 | 25625885 | 25626153 | OsKitaake04g177700 |
| Inversion | Chr6 | 26680501 | 26680712 | |
| Inversion | Chr1 | 27173399 | 27517748 | 2 |
| Inversion | Chr7 | 29233510 | 29233647 | OsKitaake07g280400 |
| Inversion | Chr1 | 42031057 | 42031229 |
Translocations: 10
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 600563 | Chr9 | 615761 | |
| Translocation | Chr12 | 600594 | Chr10 | 18998564 | |
| Translocation | Chr11 | 3575392 | Chr3 | 1027211 | |
| Translocation | Chr11 | 3575396 | Chr4 | 3204270 | |
| Translocation | Chr8 | 10631140 | Chr1 | 37633217 | |
| Translocation | Chr8 | 10633010 | Chr3 | 16194639 | OsKitaake03g206300 |
| Translocation | Chr8 | 10633012 | Chr1 | 37626818 | |
| Translocation | Chr10 | 18998497 | Chr9 | 618755 | |
| Translocation | Chr8 | 21196847 | Chr6 | 16828904 | |
| Translocation | Chr8 | 21196961 | Chr6 | 1796603 | OsKitaake08g159500 |