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| Mutant Information |
|---|
| Mutant Name | FN4597-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4597-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14636337 | A-G | HET | ||
| SBS | Chr1 | 16555285 | T-C | HET | ||
| SBS | Chr1 | 18670592 | G-A | HET | ||
| SBS | Chr1 | 24358390 | C-A | HET | ||
| SBS | Chr1 | 43632740 | T-A | HET | ||
| SBS | Chr2 | 7273240 | G-A | HET | ||
| SBS | Chr2 | 9035064 | T-C | HET | ||
| SBS | Chr2 | 12812866 | G-A | HET | ||
| SBS | Chr2 | 14513783 | A-C | HET | ||
| SBS | Chr2 | 35119068 | C-T | HET | OsKitaake02g367400 | |
| SBS | Chr3 | 5242298 | A-G | HET | ||
| SBS | Chr3 | 6999602 | C-A | HET | ||
| SBS | Chr3 | 10630237 | G-A | HOMO | ||
| SBS | Chr3 | 32403097 | T-G | HET | ||
| SBS | Chr4 | 8815676 | C-A | HET | ||
| SBS | Chr4 | 8815677 | C-A | HET | ||
| SBS | Chr4 | 21306141 | A-G | HET | ||
| SBS | Chr4 | 24661124 | G-T | HET | ||
| SBS | Chr4 | 26789955 | C-T | HET | ||
| SBS | Chr4 | 26789957 | A-G | HET | ||
| SBS | Chr4 | 31670752 | G-T | HET | OsKitaake04g249800 | |
| SBS | Chr4 | 33856020 | C-G | HET | ||
| SBS | Chr5 | 8706046 | C-T | HOMO | ||
| SBS | Chr5 | 17172402 | C-T | HET | ||
| SBS | Chr5 | 22915934 | C-A | HET | ||
| SBS | Chr6 | 6801314 | C-G | HET | ||
| SBS | Chr7 | 2588248 | G-A | HET | ||
| SBS | Chr7 | 5121383 | C-T | HET | ||
| SBS | Chr7 | 8142487 | G-A | HET | ||
| SBS | Chr7 | 10571817 | G-A | HET | ||
| SBS | Chr8 | 18891338 | C-T | HET | ||
| SBS | Chr9 | 7622326 | G-T | HET | ||
| SBS | Chr9 | 16106690 | C-A | HET | ||
| SBS | Chr10 | 12370921 | G-T | HET | ||
| SBS | Chr10 | 22174199 | G-A | HOMO | ||
| SBS | Chr11 | 27202695 | A-T | HET | ||
| SBS | Chr12 | 2709052 | G-T | HET | ||
| SBS | Chr12 | 8952771 | C-T | HET |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 2312001 | 2515000 | 203000 | 36 |
| Deletion | Chr12 | 2977776 | 2977776 | 1 | |
| Deletion | Chr4 | 7480906 | 7480906 | 1 | |
| Deletion | Chr1 | 7509866 | 7509866 | 1 | |
| Deletion | Chr4 | 10506175 | 10506176 | 2 | |
| Deletion | Chr7 | 11972327 | 11972337 | 11 | |
| Deletion | Chr4 | 16335862 | 16335867 | 6 | |
| Deletion | Chr6 | 18524891 | 18524904 | 14 | |
| Deletion | Chr7 | 27812362 | 27812365 | 4 | OsKitaake07g259900 |
| Deletion | Chr2 | 30594491 | 30594491 | 1 | |
| Deletion | Chr2 | 30959567 | 30959567 | 1 | |
| Deletion | Chr3 | 36958499 | 36958516 | 18 |
Insertions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 20460789 | 20460792 | 2 | OsKitaake04g110300  |
| Insertion | Chr5 | 24828527 | 24828529 | 1 | OsKitaake04g110300 |
| Insertion | Chr6 | 29211928 | 29211930 | 1 | |
| Insertion | Chr8 | 2510172 | 2510174 | 1 | |
| Insertion | Chr8 | 23897410 | 23897413 | 2 | |
| Insertion | Chr12 | 5500474 | 5500476 | 1 | |
| Insertion | Chr1 | 1782135 | 1782137 | 1 | |
| Insertion | Chr1 | 41983955 | 41983958 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 2563345 | 2563542 | OsKitaake06g034300 |
| Inversion | Chr1 | 4046023 | 4093763 | OsKitaake01g054900 |
| Inversion | Chr1 | 4046028 | 4093898 | OsKitaake01g054900 |
| Inversion | Chr1 | 19751635 | 20202627 | OsKitaake01g196600 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 682242 | Chr1 | 28548711 | |
| Translocation | Chr2 | 1035393 | Chr1 | 19751634 | OsKitaake01g196600 |
| Translocation | Chr8 | 12340351 | Chr1 | 10331338 | OsKitaake01g129600 |
| Translocation | Chr8 | 12340358 | Chr1 | 10352957 |