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| Mutant Information |
|---|
| Mutant Name | FN460-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN460-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16897619 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 17329256 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 23891270 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 24675323 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 11849026 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 28359902 | T-G | Hetero | START_GAINED | |
| SBS | Chr4 | 9476961 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 21027993 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 30644943 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 15768466 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 30814254 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g291500 |
| SBS | Chr7 | 8734909 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 26016057 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 7433905 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 21541115 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 25431037 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 29201423 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5766361 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6888574 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20672791 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4137817 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 13086280 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 11468382 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 12314821 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g112950 |
| SBS | Chr11 | 12314823 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g112950 |
| SBS | Chr12 | 9903086 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24971607 | A-G | Hetero | INTRON |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 3928549 | 3928554 | 5 | |
| Deletion | Chr1 | 5711001 | 5737000 | 25999 | 2 |
| Deletion | Chr4 | 5953624 | 5953631 | 7 | |
| Deletion | Chr10 | 6626898 | 6626899 | 1 | |
| Deletion | Chr1 | 7388076 | 7388078 | 2 | |
| Deletion | Chr12 | 11716620 | 11716785 | 165 | |
| Deletion | Chr5 | 11891653 | 11891654 | 1 | |
| Deletion | Chr9 | 16846457 | 16846459 | 2 | |
| Deletion | Chr9 | 20188956 | 20188963 | 7 | |
| Deletion | Chr8 | 20975332 | 20975335 | 3 | OsKitaake08g157400 |
| Deletion | Chr7 | 21043817 | 21043823 | 6 | OsKitaake07g173700 |
| Deletion | Chr10 | 21205066 | 21205081 | 15 | |
| Deletion | Chr2 | 24010053 | 24010054 | 1 | |
| Deletion | Chr6 | 30975177 | 30975185 | 8 | |
| Deletion | Chr4 | 33364687 | 33364693 | 6 | OsKitaake04g273700 |
| Deletion | Chr1 | 34985680 | 34985687 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 13321608 | 13321610 | 1 | |
| Insertion | Chr4 | 23355941 | 23355944 | 2 | |
| Insertion | Chr8 | 2708292 | 2708294 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 11770586 | 11875530 | |
| Inversion | Chr3 | 11770599 | 11875545 | |
| Inversion | Chr6 | 16935319 | 17101111 | |
| Inversion | Chr6 | 16935320 | 17101118 |