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| Mutant Information |
|---|
| Mutant Name | FN4603-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4603-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 2889276 | G-A | HOMO | ||
| SBS | Chr2 | 5969994 | A-T | HET | ||
| SBS | Chr3 | 5943333 | T-A | HET | ||
| SBS | Chr3 | 6366755 | G-A | HET | ||
| SBS | Chr3 | 8780352 | G-A | HET | ||
| SBS | Chr3 | 22207850 | G-C | HOMO | ||
| SBS | Chr4 | 10602278 | C-T | HET | ||
| SBS | Chr4 | 18795890 | T-C | HET | ||
| SBS | Chr4 | 18960414 | C-A | HOMO | ||
| SBS | Chr4 | 20768002 | C-T | HET | ||
| SBS | Chr5 | 7680631 | A-T | HET | ||
| SBS | Chr5 | 28750725 | A-G | HET | ||
| SBS | Chr5 | 28751798 | G-A | HET | OsKitaake05g269900 | |
| SBS | Chr5 | 29638923 | T-A | HET | ||
| SBS | Chr6 | 5024848 | C-T | HET | ||
| SBS | Chr6 | 6871074 | T-C | HET | ||
| SBS | Chr6 | 8872710 | C-T | HOMO | ||
| SBS | Chr6 | 14651677 | C-G | HET | ||
| SBS | Chr7 | 5156493 | G-T | HET | OsKitaake07g062900 | |
| SBS | Chr9 | 3195465 | T-C | HOMO | ||
| SBS | Chr9 | 3296228 | A-G | HET | ||
| SBS | Chr9 | 10612253 | T-A | HOMO | ||
| SBS | Chr9 | 18877112 | G-A | HET | ||
| SBS | Chr10 | 8071350 | C-T | HET | ||
| SBS | Chr10 | 10563567 | G-T | HET | ||
| SBS | Chr10 | 21188952 | C-T | HET | ||
| SBS | Chr10 | 22416208 | C-A | HOMO | ||
| SBS | Chr11 | 410107 | G-A | HET | ||
| SBS | Chr11 | 7744031 | A-G | HET | ||
| SBS | Chr11 | 8450052 | G-C | HET | ||
| SBS | Chr11 | 9045788 | T-G | HET | ||
| SBS | Chr12 | 12293286 | C-G | HET | ||
| SBS | Chr12 | 27127083 | C-A | HET |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1764181 | 1764181 | 1 | |
| Deletion | Chr2 | 2147889 | 2147889 | 1 | |
| Deletion | Chr6 | 4603963 | 4603963 | 1 | |
| Deletion | Chr12 | 8045153 | 8045153 | 1 | |
| Deletion | Chr10 | 11262001 | 11313000 | 51000 | 3 |
| Deletion | Chr1 | 16387001 | 16419000 | 32000 | 3 |
| Deletion | Chr3 | 17437774 | 17437774 | 1 | |
| Deletion | Chr4 | 17981063 | 17981065 | 3 | OsKitaake04g090600 |
| Deletion | Chr1 | 19899555 | 19899555 | 1 | |
| Deletion | Chr12 | 20169010 | 20169010 | 1 | |
| Deletion | Chr8 | 21221001 | 21323000 | 102000 | 5 |
| Deletion | Chr3 | 23310674 | 23310674 | 1 | |
| Deletion | Chr5 | 24589843 | 24589849 | 7 |
Insertions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 14377552 | 14377554 | 1 | OsKitaake02g155500  |
| Insertion | Chr3 | 14576979 | 14576981 | 1 | |
| Insertion | Chr4 | 16222064 | 16222066 | 1 | |
| Insertion | Chr4 | 26876160 | 26876162 | 1 | |
| Insertion | Chr5 | 30261092 | 30261094 | 1 | |
| Insertion | Chr8 | 22663804 | 22663806 | 1 | |
| Insertion | Chr9 | 17478790 | 17478792 | 1 | |
| Insertion | Chr1 | 24612379 | 24612381 | 1 | |
| Insertion | Chr2 | 10160478 | 10160480 | 1 | |
| Insertion | Chr5 | 13848121 | 13848123 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 910272 | 1629137 | OsKitaake02g012800 |
| Inversion | Chr1 | 15915687 | 16386109 | |
| Inversion | Chr1 | 15915713 | 16419301 | |
| Inversion | Chr12 | 16093254 | 16093500 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 21188722 | Chr3 | 18655901 | |
| Translocation | Chr10 | 21189778 | Chr3 | 18655905 | |
| Translocation | Chr9 | 22113332 | Chr1 | 31532248 | |
| Translocation | Chr9 | 22361298 | Chr1 | 31530973 | OsKitaake09g202800 |