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| Mutant Information |
|---|
| Mutant Name | FN4604-2-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4604-2-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19921428 | G-C | HET | ||
| SBS | Chr1 | 21442334 | G-A | HET | ||
| SBS | Chr2 | 28864207 | G-A | HET | ||
| SBS | Chr2 | 29326242 | C-A | HET | ||
| SBS | Chr3 | 9189185 | C-T | HOMO | ||
| SBS | Chr3 | 11461793 | A-T | HOMO | ||
| SBS | Chr4 | 15706105 | T-C | HET | ||
| SBS | Chr5 | 6111761 | G-A | HET | ||
| SBS | Chr5 | 9020466 | C-T | HET | ||
| SBS | Chr5 | 16596487 | C-G | HET | OsKitaake05g127000 | |
| SBS | Chr5 | 28211426 | C-T | HET | ||
| SBS | Chr5 | 28851535 | A-T | HET | ||
| SBS | Chr6 | 199528 | G-A | HET | ||
| SBS | Chr6 | 199529 | A-G | HET | ||
| SBS | Chr6 | 16065826 | A-G | HOMO | ||
| SBS | Chr7 | 13888348 | G-A | HET | ||
| SBS | Chr8 | 4606404 | T-A | HET | ||
| SBS | Chr8 | 22161314 | T-C | HET | ||
| SBS | Chr9 | 6997083 | C-T | HOMO | ||
| SBS | Chr9 | 6997084 | C-T | HOMO | ||
| SBS | Chr9 | 7034717 | G-T | HOMO | ||
| SBS | Chr11 | 3986227 | C-A | HET | ||
| SBS | Chr11 | 5406847 | C-A | HET | ||
| SBS | Chr11 | 23808689 | C-T | HET | ||
| SBS | Chr12 | 10928390 | G-A | HET | ||
| SBS | Chr12 | 14745925 | G-A | HET |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 741820 | 741821 | 2 | |
| Deletion | Chr4 | 4446994 | 4446996 | 3 | |
| Deletion | Chr2 | 6576716 | 6576716 | 1 | |
| Deletion | Chr1 | 7599186 | 7599193 | 8 | |
| Deletion | Chr10 | 8338811 | 8338817 | 7 | |
| Deletion | Chr4 | 11077904 | 11077906 | 3 | |
| Deletion | Chr7 | 11995366 | 11995367 | 2 | |
| Deletion | Chr10 | 13024244 | 13024244 | 1 | |
| Deletion | Chr2 | 15417743 | 15417744 | 2 | |
| Deletion | Chr10 | 15995628 | 15995628 | 1 | |
| Deletion | Chr10 | 16847247 | 16847247 | 1 | |
| Deletion | Chr11 | 17395297 | 17395297 | 1 | |
| Deletion | Chr7 | 18366128 | 18366129 | 2 | |
| Deletion | Chr4 | 26181160 | 26181160 | 1 | |
| Deletion | Chr2 | 29163624 | 29163624 | 1 | |
| Deletion | Chr1 | 29307251 | 29307251 | 1 | |
| Deletion | Chr2 | 29527965 | 29527970 | 6 | OsKitaake02g297700 |
Insertions: 14
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 10987162 | Chr5 | 22328250 | |
| Translocation | Chr8 | 10987170 | Chr5 | 22328619 | |
| Translocation | Chr5 | 22326632 | Chr1 | 3090998 | OsKitaake01g039300 |
| Translocation | Chr5 | 22328239 | Chr1 | 3090947 |