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| Mutant Information |
|---|
| Mutant Name | FN4606-2-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4606-2-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8955982 | C-A | HOMO | ||
| SBS | Chr2 | 18387710 | T-A | HET | ||
| SBS | Chr2 | 34159825 | T-G | HET | ||
| SBS | Chr3 | 6827732 | A-G | HET | OsKitaake03g096800 | |
| SBS | Chr3 | 7822230 | G-A | HET | ||
| SBS | Chr3 | 20179677 | C-T | HOMO | ||
| SBS | Chr3 | 34918928 | G-A | HOMO | OsKitaake03g381300 | |
| SBS | Chr3 | 35624081 | C-T | HOMO | ||
| SBS | Chr4 | 21028143 | C-A | HET | ||
| SBS | Chr4 | 26425363 | A-G | HET | ||
| SBS | Chr4 | 27103317 | G-C | HET | ||
| SBS | Chr5 | 15400536 | A-C | HET | ||
| SBS | Chr5 | 28665659 | G-T | HOMO | OsKitaake05g269100 | |
| SBS | Chr5 | 28665660 | C-T | HOMO | ||
| SBS | Chr6 | 18050423 | T-G | HET | ||
| SBS | Chr7 | 8898587 | A-G | HET | ||
| SBS | Chr7 | 15798395 | A-T | HOMO | ||
| SBS | Chr7 | 23385763 | A-T | HOMO | ||
| SBS | Chr8 | 14567441 | C-T | HET | ||
| SBS | Chr8 | 14684765 | G-T | HET | ||
| SBS | Chr9 | 8273348 | A-T | HET | ||
| SBS | Chr9 | 8851245 | G-C | HET | ||
| SBS | Chr9 | 18690924 | C-A | HOMO | ||
| SBS | Chr9 | 20388191 | T-A | HET | ||
| SBS | Chr10 | 3172391 | C-T | HET | ||
| SBS | Chr10 | 8460086 | C-T | HET | ||
| SBS | Chr11 | 6276516 | A-G | HOMO | ||
| SBS | Chr11 | 10988746 | G-A | HET | ||
| SBS | Chr11 | 12906409 | T-A | HET | ||
| SBS | Chr11 | 19652169 | G-T | HET | ||
| SBS | Chr11 | 29180299 | G-A | HOMO |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2735114 | 2735120 | 7 | |
| Deletion | Chr1 | 3242763 | 3242763 | 1 | |
| Deletion | Chr9 | 3712465 | 3712465 | 1 | |
| Deletion | Chr11 | 8329149 | 8329156 | 8 | |
| Deletion | Chr3 | 8823649 | 8823655 | 7 | |
| Deletion | Chr3 | 8823660 | 8823666 | 7 | |
| Deletion | Chr2 | 10151480 | 10151489 | 10 | |
| Deletion | Chr6 | 13779248 | 13779259 | 12 | |
| Deletion | Chr1 | 18687299 | 18687299 | 1 | |
| Deletion | Chr8 | 20910151 | 20910151 | 1 | |
| Deletion | Chr3 | 21671737 | 21671737 | 1 | |
| Deletion | Chr5 | 24298898 | 24298899 | 2 | |
| Deletion | Chr5 | 24874200 | 24874210 | 11 | |
| Deletion | Chr5 | 29009459 | 29009466 | 8 | |
| Deletion | Chr4 | 29014692 | 29014692 | 1 | |
| Deletion | Chr5 | 29292960 | 29292961 | 2 | OsKitaake05g277900 |
| Deletion | Chr1 | 32540809 | 32540809 | 1 | |
| Deletion | Chr4 | 34304001 | 34319000 | 15000 | |
| Deletion | Chr1 | 34905107 | 34905114 | 8 |
Insertions: 5
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 7530523 | 7530667 | |
| Inversion | Chr2 | 19148012 | 19200314 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 6255508 | Chr1 | 41481961 | |
| Translocation | Chr9 | 6257049 | Chr1 | 41490632 | |
| Translocation | Chr3 | 34917902 | Chr2 | 16189463 | OsKitaake03g381300 |
| Translocation | Chr3 | 34918307 | Chr2 | 16189449 |