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| Mutant Information |
|---|
| Mutant Name | FN4607-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4607-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5694235 | T-C | HET | ||
| SBS | Chr1 | 6061904 | G-A | HET | ||
| SBS | Chr1 | 10758566 | C-T | HET | ||
| SBS | Chr2 | 4480162 | C-T | HET | ||
| SBS | Chr2 | 11930867 | T-C | HET | ||
| SBS | Chr2 | 30876588 | A-G | HET | ||
| SBS | Chr3 | 16053942 | A-T | HET | ||
| SBS | Chr3 | 16053944 | C-G | HET | ||
| SBS | Chr3 | 23781621 | G-A | HET | ||
| SBS | Chr3 | 26105093 | A-C | HET | ||
| SBS | Chr4 | 6777295 | T-C | HET | ||
| SBS | Chr5 | 1264465 | A-C | HOMO | ||
| SBS | Chr5 | 12844610 | T-C | HOMO | ||
| SBS | Chr5 | 18710086 | C-A | HET | ||
| SBS | Chr5 | 22331551 | C-T | HET | ||
| SBS | Chr6 | 12110482 | A-G | HET | ||
| SBS | Chr6 | 16659945 | C-T | HET | ||
| SBS | Chr6 | 24245913 | T-C | HET | ||
| SBS | Chr6 | 29257663 | C-T | HET | OsKitaake06g271000 | |
| SBS | Chr6 | 29257664 | C-T | HET | OsKitaake06g271000 | |
| SBS | Chr7 | 1700980 | A-C | HOMO | ||
| SBS | Chr7 | 14428632 | C-A | HOMO | ||
| SBS | Chr7 | 25346766 | G-A | HET | ||
| SBS | Chr7 | 27205052 | G-A | HET | ||
| SBS | Chr8 | 26488874 | A-T | HET | ||
| SBS | Chr9 | 3618772 | T-G | HET | ||
| SBS | Chr9 | 12764562 | G-A | HOMO | ||
| SBS | Chr9 | 12768148 | G-C | HOMO | ||
| SBS | Chr9 | 12768150 | G-A | HOMO | ||
| SBS | Chr10 | 1888345 | A-T | HOMO | ||
| SBS | Chr10 | 8310695 | C-G | HET | ||
| SBS | Chr10 | 9533623 | T-G | HET | ||
| SBS | Chr10 | 10626376 | G-A | HOMO | ||
| SBS | Chr11 | 5278588 | G-A | HET | ||
| SBS | Chr11 | 14654824 | G-A | HET | ||
| SBS | Chr11 | 15384753 | G-C | HET | ||
| SBS | Chr11 | 18053142 | G-T | HOMO | ||
| SBS | Chr12 | 8814682 | G-A | HET |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 40845 | 40845 | 1 | |
| Deletion | Chr1 | 6206001 | 6305000 | 99000 | 10 |
| Deletion | Chr9 | 6225302 | 6225307 | 6 | |
| Deletion | Chr1 | 6311001 | 6504000 | 193000 | 22 |
| Deletion | Chr5 | 9853752 | 9853756 | 5 | |
| Deletion | Chr10 | 10574001 | 10618000 | 44000 | 3 |
| Deletion | Chr2 | 11242321 | 11242325 | 5 | |
| Deletion | Chr3 | 13809172 | 13809172 | 1 | |
| Deletion | Chr3 | 17154575 | 17154577 | 3 | |
| Deletion | Chr12 | 19747177 | 19747178 | 2 | |
| Deletion | Chr2 | 22643197 | 22643200 | 4 | OsKitaake02g219800 |
| Deletion | Chr8 | 26140080 | 26140080 | 1 | |
| Deletion | Chr4 | 34964136 | 34964147 | 12 |
Insertions: 5
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 10389079 | 10703469 | OsKitaake01g130300 |
| Inversion | Chr1 | 10389088 | 10703475 | OsKitaake01g130300 |
| Inversion | Chr12 | 24062106 | 24410767 | |
| Inversion | Chr1 | 25406860 | 25407031 |