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| Mutant Information |
|---|
| Mutant Name | FN4608-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4608-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1037955 | G-A | HET | ||
| SBS | Chr1 | 30744044 | T-G | HET | ||
| SBS | Chr1 | 43539223 | T-C | HET | ||
| SBS | Chr2 | 20850747 | G-T | HET | ||
| SBS | Chr2 | 33274535 | G-C | HOMO | ||
| SBS | Chr3 | 15179650 | C-T | HET | ||
| SBS | Chr3 | 16945431 | G-A | HET | ||
| SBS | Chr3 | 16951963 | T-A | HET | ||
| SBS | Chr4 | 8146349 | C-T | HET | ||
| SBS | Chr4 | 15601788 | T-C | HET | ||
| SBS | Chr4 | 16668303 | G-A | HET | ||
| SBS | Chr4 | 23832420 | C-T | HET | ||
| SBS | Chr5 | 9578646 | G-T | HET | ||
| SBS | Chr5 | 17932422 | T-C | HET | OsKitaake05g139000 | |
| SBS | Chr6 | 7587863 | A-T | HET | ||
| SBS | Chr6 | 9793068 | C-T | HET | ||
| SBS | Chr6 | 26890894 | T-C | HET | ||
| SBS | Chr8 | 2829778 | T-C | HOMO | ||
| SBS | Chr8 | 7346101 | C-T | HOMO | ||
| SBS | Chr9 | 8052318 | G-A | HOMO | ||
| SBS | Chr9 | 18904000 | T-C | HET | ||
| SBS | Chr10 | 5877646 | T-A | HET | ||
| SBS | Chr10 | 11369485 | A-T | HOMO | ||
| SBS | Chr10 | 11839833 | G-A | HOMO | ||
| SBS | Chr10 | 21985962 | G-T | HET | ||
| SBS | Chr10 | 22942876 | C-T | HET | ||
| SBS | Chr11 | 7083323 | C-T | HOMO | ||
| SBS | Chr11 | 20867509 | A-G | HET | ||
| SBS | Chr11 | 26466137 | A-G | HET | ||
| SBS | Chr12 | 2274148 | A-G | HOMO | ||
| SBS | Chr12 | 20673263 | G-C | HOMO | ||
| SBS | Chr12 | 26390667 | A-G | HET |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1032972 | 1032988 | 17 | |
| Deletion | Chr6 | 1958575 | 1958577 | 3 | |
| Deletion | Chr6 | 7584066 | 7584068 | 3 | |
| Deletion | Chr9 | 8297901 | 8297901 | 1 | |
| Deletion | Chr6 | 8795876 | 8795879 | 4 | OsKitaake06g106800 |
| Deletion | Chr2 | 10155854 | 10155854 | 1 | |
| Deletion | Chr10 | 11893015 | 11893015 | 1 | |
| Deletion | Chr10 | 12834913 | 12834914 | 2 | |
| Deletion | Chr1 | 13575001 | 13695000 | 120000 | 10 |
| Deletion | Chr11 | 13746177 | 13746177 | 1 | |
| Deletion | Chr7 | 15198618 | 15198627 | 10 | |
| Deletion | Chr12 | 16626571 | 16626571 | 1 | |
| Deletion | Chr4 | 20556475 | 20556475 | 1 | |
| Deletion | Chr11 | 22375791 | 22375798 | 8 | |
| Deletion | Chr5 | 25389152 | 25389152 | 1 | |
| Deletion | Chr8 | 27895292 | 27895293 | 2 | |
| Deletion | Chr1 | 30477631 | 30477635 | 5 | |
| Deletion | Chr3 | 34705713 | 34705713 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 3314139 | 3314142 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 20220508 | 20223448 | OsKitaake01g198950 |
| Inversion | Chr1 | 20220513 | 20223457 | OsKitaake01g198950 |
| Inversion | Chr1 | 31316552 | 31542324 | |
| Inversion | Chr1 | 31542328 | 31555010 |