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Mutant Information

Mutant Name	FN461-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN461-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 3745061 A-T Hetero INTERGENIC
SBS Chr2 23375013 T-A Hetero INTRON
SBS Chr2 36419170 G-C Homo INTERGENIC
SBS Chr3 12907000 C-T Homo INTERGENIC
SBS Chr3 17566885 C-G Hetero INTERGENIC
SBS Chr4 22408681 T-G Hetero INTERGENIC
SBS Chr4 24026912 G-A Hetero INTERGENIC
SBS Chr4 27777989 G-A Hetero INTERGENIC
SBS Chr5 2931883 G-A Hetero INTERGENIC
SBS Chr5 16151856 T-C Hetero UTR_3_PRIME
SBS Chr5 17004108 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g130500
SBS Chr5 30234190 T-A Homo INTERGENIC
SBS Chr6 14407761 G-T Hetero INTERGENIC
SBS Chr7 436072 A-C Hetero INTRON
SBS Chr8 14206732 G-T Hetero INTERGENIC
SBS Chr8 17300365 T-G Hetero INTERGENIC
SBS Chr9 13196152 C-T Homo INTERGENIC
SBS Chr9 15371802 G-A Hetero INTERGENIC
SBS Chr10 1595276 T-G Hetero INTERGENIC
SBS Chr10 4546365 G-T Homo INTERGENIC
SBS Chr11 3999719 G-A Homo UTR_5_PRIME
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr11 20013471 T-C Hetero UTR_5_PRIME
SBS Chr11 26111700 C-A Hetero INTERGENIC
SBS Chr12 14770376 C-A Hetero INTERGENIC
SBS Chr12 14770377 A-C Hetero INTERGENIC
SBS Chr12 19920188 C-T Homo INTERGENIC
SBS Chr12 26432822 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1233499 1233503 4 OsKitaake01g014600
Deletion Chr5 3798940 3798944 4 OsKitaake05g045400
Deletion Chr4 5742295 5742297 2
Deletion Chr10 9066896 9066899 3
Deletion Chr4 13955592 13955604 12
Deletion Chr5 15447051 15447059 8
Deletion Chr4 16097602 16097604 2
Deletion Chr6 20098250 20098317 67
Deletion Chr1 20824224 20824236 12
Deletion Chr1 23887376 23887378 2
Deletion Chr11 26086778 26086784 6
Deletion Chr12 26657165 26657166 1
Deletion Chr4 34798778 34798780 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 534484 534487 2
Insertion Chr1 9765307 9765311 3
Insertion Chr1 22442796 22442799 2
Insertion Chr5 16011110 16011112 1
Insertion Chr12 15941367 15941369 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 24026974 24475082 OsKitaake02g236200
Inversion Chr2 24475084 24656681 OsKitaake02g245300
Inversion Chr7 26175761 26266348 2
Inversion Chr7 26175765 26266352 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	3745061	A-T	Hetero	INTERGENIC
SBS	Chr2	23375013	T-A	Hetero	INTRON
SBS	Chr2	36419170	G-C	Homo	INTERGENIC
SBS	Chr3	12907000	C-T	Homo	INTERGENIC
SBS	Chr3	17566885	C-G	Hetero	INTERGENIC
SBS	Chr4	22408681	T-G	Hetero	INTERGENIC
SBS	Chr4	24026912	G-A	Hetero	INTERGENIC
SBS	Chr4	27777989	G-A	Hetero	INTERGENIC
SBS	Chr5	2931883	G-A	Hetero	INTERGENIC
SBS	Chr5	16151856	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	17004108	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g130500
SBS	Chr5	30234190	T-A	Homo	INTERGENIC
SBS	Chr6	14407761	G-T	Hetero	INTERGENIC
SBS	Chr7	436072	A-C	Hetero	INTRON
SBS	Chr8	14206732	G-T	Hetero	INTERGENIC
SBS	Chr8	17300365	T-G	Hetero	INTERGENIC
SBS	Chr9	13196152	C-T	Homo	INTERGENIC
SBS	Chr9	15371802	G-A	Hetero	INTERGENIC
SBS	Chr10	1595276	T-G	Hetero	INTERGENIC
SBS	Chr10	4546365	G-T	Homo	INTERGENIC
SBS	Chr11	3999719	G-A	Homo	UTR_5_PRIME
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr11	20013471	T-C	Hetero	UTR_5_PRIME
SBS	Chr11	26111700	C-A	Hetero	INTERGENIC
SBS	Chr12	14770376	C-A	Hetero	INTERGENIC
SBS	Chr12	14770377	A-C	Hetero	INTERGENIC
SBS	Chr12	19920188	C-T	Homo	INTERGENIC
SBS	Chr12	26432822	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1233499	1233503	4	OsKitaake01g014600
Deletion	Chr5	3798940	3798944	4	OsKitaake05g045400
Deletion	Chr4	5742295	5742297	2
Deletion	Chr10	9066896	9066899	3
Deletion	Chr4	13955592	13955604	12
Deletion	Chr5	15447051	15447059	8
Deletion	Chr4	16097602	16097604	2
Deletion	Chr6	20098250	20098317	67
Deletion	Chr1	20824224	20824236	12
Deletion	Chr1	23887376	23887378	2
Deletion	Chr11	26086778	26086784	6
Deletion	Chr12	26657165	26657166	1
Deletion	Chr4	34798778	34798780	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	24026974	24475082	OsKitaake02g236200
Inversion	Chr2	24475084	24656681	OsKitaake02g245300
Inversion	Chr7	26175761	26266348	2
Inversion	Chr7	26175765	26266352	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes