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Mutant Information

Mutant Name	FN4610-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4610-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 1202071 T-C HET
SBS Chr3 3420955 A-T HET OsKitaake03g048000
SBS Chr3 20408516 C-T HOMO
SBS Chr3 25057342 G-T HOMO
SBS Chr4 30993516 G-A HOMO
SBS Chr5 5008044 C-T HOMO
SBS Chr5 27469253 G-A HOMO
SBS Chr6 17043645 T-A HOMO
SBS Chr6 17044111 C-T HOMO
SBS Chr6 17044119 G-T HOMO
SBS Chr6 19533672 T-C HOMO
SBS Chr6 26281233 C-T HOMO
SBS Chr6 29962342 G-T HET
SBS Chr7 5761597 G-T HET
SBS Chr7 14487767 T-A HOMO
SBS Chr7 20356492 A-G HOMO
SBS Chr7 20497455 G-A HET
SBS Chr7 28109654 C-T HET
SBS Chr8 8856140 C-T HOMO
SBS Chr9 10326714 C-T HOMO
SBS Chr9 17676629 A-T HOMO
SBS Chr10 5680615 T-C HOMO
SBS Chr10 9361866 G-T HET
SBS Chr10 10186038 C-T HET
SBS Chr10 18698650 A-C HOMO
SBS Chr11 14759836 G-A HET
SBS Chr12 7850094 T-C HET
SBS Chr12 22804830 C-G HET

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1312475 1312475 1
Deletion Chr7 2466738 2466739 2
Deletion Chr10 4819716 4819716 1
Deletion Chr5 6307813 6307818 6
Deletion Chr4 8899123 8899123 1
Deletion Chr7 9957892 9957893 2
Deletion Chr3 11293767 11293767 1
Deletion Chr2 11774401 11774401 1
Deletion Chr5 15426733 15426734 2
Deletion Chr12 15471314 15471322 9
Deletion Chr10 16289076 16289076 1
Deletion Chr7 20418139 20418145 7
Deletion Chr4 27529633 27529643 11
Deletion Chr11 29552001 29620000 68000 11
Deletion Chr11 29624001 29732000 108000 13
Deletion Chr2 35138776 35138785 10
Deletion Chr1 37102283 37102283 1
Deletion Chr1 37111322 37111327 6
Deletion Chr1 37245447 37245452 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 25139969 25139971 1
Insertion Chr3 30542084 30542086 1
Insertion Chr4 8621006 8621013 6
Insertion Chr12 10653213 10653215 1
Insertion Chr1 11764883 11764886 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 24827987 Chr1 36949455
Translocation Chr7 24828101 Chr1 36949368 OsKitaake07g221800
Translocation Chr11 29552382 Chr8 19861

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	1202071	T-C	HET
SBS	Chr3	3420955	A-T	HET		OsKitaake03g048000
SBS	Chr3	20408516	C-T	HOMO
SBS	Chr3	25057342	G-T	HOMO
SBS	Chr4	30993516	G-A	HOMO
SBS	Chr5	5008044	C-T	HOMO
SBS	Chr5	27469253	G-A	HOMO
SBS	Chr6	17043645	T-A	HOMO
SBS	Chr6	17044111	C-T	HOMO
SBS	Chr6	17044119	G-T	HOMO
SBS	Chr6	19533672	T-C	HOMO
SBS	Chr6	26281233	C-T	HOMO
SBS	Chr6	29962342	G-T	HET
SBS	Chr7	5761597	G-T	HET
SBS	Chr7	14487767	T-A	HOMO
SBS	Chr7	20356492	A-G	HOMO
SBS	Chr7	20497455	G-A	HET
SBS	Chr7	28109654	C-T	HET
SBS	Chr8	8856140	C-T	HOMO
SBS	Chr9	10326714	C-T	HOMO
SBS	Chr9	17676629	A-T	HOMO
SBS	Chr10	5680615	T-C	HOMO
SBS	Chr10	9361866	G-T	HET
SBS	Chr10	10186038	C-T	HET
SBS	Chr10	18698650	A-C	HOMO
SBS	Chr11	14759836	G-A	HET
SBS	Chr12	7850094	T-C	HET
SBS	Chr12	22804830	C-G	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1312475	1312475	1
Deletion	Chr7	2466738	2466739	2
Deletion	Chr10	4819716	4819716	1
Deletion	Chr5	6307813	6307818	6
Deletion	Chr4	8899123	8899123	1
Deletion	Chr7	9957892	9957893	2
Deletion	Chr3	11293767	11293767	1
Deletion	Chr2	11774401	11774401	1
Deletion	Chr5	15426733	15426734	2
Deletion	Chr12	15471314	15471322	9
Deletion	Chr10	16289076	16289076	1
Deletion	Chr7	20418139	20418145	7
Deletion	Chr4	27529633	27529643	11
Deletion	Chr11	29552001	29620000	68000	11
Deletion	Chr11	29624001	29732000	108000	13
Deletion	Chr2	35138776	35138785	10
Deletion	Chr1	37102283	37102283	1
Deletion	Chr1	37111322	37111327	6
Deletion	Chr1	37245447	37245452	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	24827987	Chr1	36949455
Translocation	Chr7	24828101	Chr1	36949368	OsKitaake07g221800
Translocation	Chr11	29552382	Chr8	19861

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes