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| Mutant Information |
|---|
| Mutant Name | FN462-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN462-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5581600 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 5857631 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43328869 | C-T | Homo | INTRON | |
| SBS | Chr2 | 3520797 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 7343298 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 9936571 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10675885 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 11150606 | G-C | Hetero | INTRON | |
| SBS | Chr2 | 12604608 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 6423629 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 19560418 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19894320 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 23445723 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11252951 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20014 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 2308951 | T-C | Homo | INTRON | |
| SBS | Chr5 | 2597735 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13504918 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 16055832 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24767314 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 26223914 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 4222533 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 10742288 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 5458973 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g066500 |
| SBS | Chr7 | 13509584 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g118800 |
| SBS | Chr7 | 22438570 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 2009562 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17321924 | T-A | Homo | INTRON | |
| SBS | Chr8 | 22087520 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 6933609 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7870631 | G-T | Hetero | INTRON | |
| SBS | Chr10 | 1591884 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4396749 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4884323 | C-G | Hetero | INTRON | |
| SBS | Chr10 | 12951967 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23286312 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 2670729 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 6214447 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 7278941 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9406148 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 9441394 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20925683 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 22910685 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g181400 |
| SBS | Chr11 | 26790289 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1696562 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g025500 |
| SBS | Chr12 | 8249578 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 12169220 | G-C | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 12261419 | 12261420 | 1 | |
| Deletion | Chr11 | 14278506 | 14278523 | 17 | |
| Deletion | Chr11 | 14560799 | 14560800 | 1 | |
| Deletion | Chr5 | 15429295 | 15429297 | 2 | |
| Deletion | Chr6 | 20356019 | 20356044 | 25 | |
| Deletion | Chr6 | 22074913 | 22074914 | 1 | |
| Deletion | Chr5 | 23753002 | 23753012 | 10 | OsKitaake05g208200 |
| Deletion | Chr2 | 25009685 | 25009767 | 82 | |
| Deletion | Chr3 | 25935725 | 25935871 | 146 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 14188669 | 14188672 | 2 | |
| Insertion | Chr10 | 4427109 | 4427111 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 5611901 | 6062514 | |
| Inversion | Chr10 | 13131316 | 13149969 |